title: Tree-guided sparse coding for brain disease classification.
abstract: Neuroimage analysis based on machine learning technologies has been widely employed to assist the diagnosis of brain diseases such as Alzheimer's disease and its prodromal stage--mild cognitive impairment. One of the major problems in brain image analysis involves learning the most relevant features from a huge set of raw imaging features, which are far more numerous than the training samples. This makes the tasks of both disease classification and interpretation extremely challenging. Sparse coding via L1 regularization, such as Lasso, can provide an effective way to select the most relevant features for alleviating the curse of dimensionality and achieving more accurate classification. However, the selected features may distribute randomly throughout the whole brain, although in reality disease-induced abnormal changes often happen in a few contiguous regions. To address this issue, we investigate a tree-guided sparse coding method to identify grouped imaging features in the brain regions for guiding disease classification and interpretation. Spatial relationships of the image structures are imposed during sparse coding with a tree-guided regularization. Our experimental results on the ADNI dataset show that the tree-guided sparse coding method not only achieves better classification accuracy, but also allows for more meaningful diagnosis of brain diseases compared with the conventional L1-regularized LASSO.
authors.affiliation: IDEA Lab, Department of Radiology and BRIC, University of North Carolina at Chapel Hill, USA.
authors.forename: Manhua
authors.initials: M
authors.lastname: Liu
authors.forename: Daoqiang
authors.initials: D
authors.lastname: Zhang
authors.forename: Pew-Thian
authors.initials: PT
authors.lastname: Yap
authors.forename: Dinggang
authors.initials: D
authors.lastname: Shen
mesh_terms: D000465:Algorithms; D000544:Alzheimer Disease / Q000473:pathology*; D001921:Brain / Q000473:pathology*; D060825:Cognitive Dysfunction / Q000473:pathology*; D006801:Humans; D007089:Image Enhancement / Q000379:methods; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D008279:Magnetic Resonance Imaging / Q000379:methods*; D010363:Pattern Recognition, Automated / Q000379:methods*; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity