title: The okra (Abelmoschus esculentus) transcriptome as a source for gene sequence information and molecular markers for diversity analysis.
abstract: A combined leaf and pod transcriptome of okra (Abelmoschus esculentus (L.) Moench) has been produced by RNA sequencing and short read assembly. More than 150,000 unigenes were obtained, comprising some 46 million base pairs of sequence information. More than 55% of the unigenes were annotated through sequence comparison with databases. The okra transcriptome sequences were mined for simple sequence repeat (SSR) markers. From 935 non-redundant SSR motifs identified in the unigene set, 199 were chosen for testing in a germplasm set, resulting in 161 polymorphic SSR markers. From this set, 19 markers were selected for a diversity analysis on 65 okra accessions comprising three different species, revealing 58 different genotypes and resulted in clustering of the accessions according to species and geographic origin. The okra gene sequence information and the marker resource are made available to the research community for functional genomics and breeding research.
authors.affiliation: AVRDC - The World Vegetable Center, P.O. Box 42, Shanhua, Tainan 74199, Taiwan. roland.schafleitner@worldveg.org
authors.forename: Roland
authors.initials: R
authors.lastname: Schafleitner
authors.forename: Sanjeet
authors.initials: S
authors.lastname: Kumar
authors.forename: Chen-Yu
authors.initials: CY
authors.lastname: Lin
authors.forename: Satish Gajanana
authors.initials: SG
authors.lastname: Hegde
authors.forename: Andreas
authors.initials: A
authors.lastname: Ebert
mesh_terms: D028483:Abelmoschus / Q000235:genetics*; D018744:DNA, Plant / Q000235:genetics; D017343:Genes, Plant; D018745:Genome, Plant; D018895:Microsatellite Repeats / Q000235:genetics*; D018515:Plant Leaves / Q000235:genetics*; D011110:Polymorphism, Genetic; D017423:Sequence Analysis, RNA; D059467:Transcriptome
chemical_list: D018744:DNA, Plant