title: Fumaric acid production in Saccharomyces cerevisiae by in silico aided metabolic engineering.
abstract: Fumaric acid (FA) is a promising biomass-derived building-block chemical. Bio-based FA production from renewable feedstock is a promising and sustainable alternative to petroleum-based chemical synthesis. Here we report on FA production by direct fermentation using metabolically engineered Saccharomyces cerevisiae with the aid of in silico analysis of a genome-scale metabolic model. First, FUM1 was selected as the target gene on the basis of extensive literature mining. Flux balance analysis (FBA) revealed that FUM1 deletion can lead to FA production and slightly lower growth of S. cerevisiae. The engineered S. cerevisiae strain obtained by deleting FUM1 can produce FA up to a concentration of 610±31 mg L(-1) without any apparent change in growth in fed-batch culture. FT-IR and (1)H and (13)C NMR spectra confirmed that FA was synthesized by the engineered S. cerevisiae strain. FBA identified pyruvate carboxylase as one of the factors limiting higher FA production. When the RoPYC gene was introduced, S. cerevisiae produced 1134±48 mg L(-1) FA. Furthermore, the final engineered S. cerevisiae strain was able to produce 1675±52 mg L(-1) FA in batch culture when the SFC1 gene encoding a succinate-fumarate transporter was introduced. These results demonstrate that the model shows great predictive capability for metabolic engineering. Moreover, FA production in S. cerevisiae can be efficiently developed with the aid of in silico metabolic engineering.
authors.affiliation: State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.
authors.forename: Guoqiang
authors.initials: G
authors.lastname: Xu
authors.forename: Wei
authors.initials: W
authors.lastname: Zou
authors.forename: Xiulai
authors.initials: X
authors.lastname: Chen
authors.forename: Nan
authors.initials: N
authors.lastname: Xu
authors.forename: Liming
authors.initials: L
authors.lastname: Liu
authors.forename: Jian
authors.initials: J
authors.lastname: Chen
mesh_terms: D018533:Biomass; D003198:Computer Simulation; D005650:Fumarates / Q000378:metabolism*; D017353:Gene Deletion; D009682:Magnetic Resonance Spectroscopy; D060847:Metabolic Engineering; D012441:Saccharomyces cerevisiae / Q000254:growth & development / Q000378:metabolism*; D029701:Saccharomyces cerevisiae Proteins / Q000235:genetics / Q000378:metabolism*; D017550:Spectroscopy, Fourier Transform Infrared
chemical_list: D005650:Fumarates; D029701:Saccharomyces cerevisiae Proteins; C032005:fumaric acid