title: Improving accuracy and power with transfer learning using a meta-analytic database.
abstract: Typical cohorts in brain imaging studies are not large enough for systematic testing of all the information contained in the images. To build testable working hypotheses, investigators thus rely on analysis of previous work, sometimes formalized in a so-called meta-analysis. In brain imaging, this approach underlies the specification of regions of interest (ROIs) that are usually selected on the basis of the coordinates of previously detected effects. In this paper, we propose to use a database of images, rather than coordinates, and frame the problem as transfer learning: learning a discriminant model on a reference task to apply it to a different but related new task. To facilitate statistical analysis of small cohorts, we use a sparse discriminant model that selects predictive voxels on the reference task and thus provides a principled procedure to define ROIs. The benefits of our approach are twofold. First it uses the reference database for prediction, i.e., to provide potential biomarkers in a clinical setting. Second it increases statistical power on the new task. We demonstrate on a set of 18 pairs of functional MRI experimental conditions that our approach gives good prediction. In addition, on a specific transfer situation involving different scanners at different locations, we show that voxel selection based on transfer learning leads to higher detection power on small cohorts.
authors.affiliation: Parietal Team, INRIA Saclay-Ile-de-France, Saclay, France. yannick.schwartz@inria.fr
authors.forename: Yannick
authors.initials: Y
authors.lastname: Schwartz
authors.forename: Gaël
authors.initials: G
authors.lastname: Varoquaux
authors.forename: Christophe
authors.initials: C
authors.lastname: Pallier
authors.forename: Philippe
authors.initials: P
authors.lastname: Pinel
authors.forename: Jean-Baptiste
authors.initials: JB
authors.lastname: Poline
authors.forename: Bertrand
authors.initials: B
authors.lastname: Thirion
mesh_terms: D000465:Algorithms; D001921:Brain / Q000502:physiology*; D001931:Brain Mapping; D016208:Databases, Factual; D006801:Humans; D007089:Image Enhancement / Q000379:methods*; D007090:Image Interpretation, Computer-Assisted / Q000379:methods; D016247:Information Storage and Retrieval; D008279:Magnetic Resonance Imaging / Q000379:methods*; D015201:Meta-Analysis as Topic; D010363:Pattern Recognition, Automated / Q000379:methods; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity