title: A new class of wheat gliadin genes and proteins.
abstract: The utility of mining DNA sequence data to understand the structure and expression of cereal prolamin genes is demonstrated by the identification of a new class of wheat prolamins. This previously unrecognized wheat prolamin class, given the name δ-gliadins, is the most direct ortholog of barley γ3-hordeins. Phylogenetic analysis shows that the orthologous δ-gliadins and γ3-hordeins form a distinct prolamin branch that existed separate from the γ-gliadins and γ-hordeins in an ancestral Triticeae prior to the branching of wheat and barley. The expressed δ-gliadins are encoded by a single gene in each of the hexaploid wheat genomes. This single δ-gliadin/γ3-hordein ortholog may be a general feature of the Triticeae tribe since examination of ESTs from three barley cultivars also confirms a single γ3-hordein gene. Analysis of ESTs and cDNAs shows that the genes are expressed in at least five hexaploid wheat cultivars in addition to diploids Triticum monococcum and Aegilops tauschii. The latter two sequences also allow assignment of the δ-gliadin genes to the A and D genomes, respectively, with the third sequence type assumed to be from the B genome. Two wheat cultivars for which there are sufficient ESTs show different patterns of expression, i.e., with cv Chinese Spring expressing the genes from the A and B genomes, while cv Recital has ESTs from the A and D genomes. Genomic sequences of Chinese Spring show that the D genome gene is inactivated by tandem premature stop codons. A fourth δ-gliadin sequence occurs in the D genome of both Chinese Spring and Ae. tauschii, but no ESTs match this sequence and limited genomic sequences indicates a pseudogene containing frame shifts and premature stop codons. Sequencing of BACs covering a 3 Mb region from Ae. tauschii locates the δ-gliadin gene to the complex Gli-1 plus Glu-3 region on chromosome 1.
authors.affiliation: Genomics and Gene Discovery Research Unit, Western Regional Research Center, Agricultural Research Service, United States Department of Agriculture, Albany, CA, USA. olin.anderson@ars.usda.gov
authors.forename: Olin D
authors.initials: OD
authors.lastname: Anderson
authors.forename: Lingli
authors.initials: L
authors.lastname: Dong
authors.forename: Naxin
authors.initials: N
authors.lastname: Huo
authors.forename: Yong Q
authors.initials: YQ
authors.lastname: Gu
mesh_terms: D000595:Amino Acid Sequence; D002874:Chromosome Mapping; D020224:Expressed Sequence Tags; D018506:Gene Expression Regulation, Plant; D023061:Gene Order; D018745:Genome, Plant; D005903:Gliadin / Q000235:genetics*; D008969:Molecular Sequence Data; D010802:Phylogeny; D055315:Prolamins / Q000235:genetics; D054730:Protein Interaction Domains and Motifs; D012091:Repetitive Sequences, Nucleic Acid; D016415:Sequence Alignment; D014908:Triticum / Q000145:classification / Q000235:genetics*
chemical_list: D055315:Prolamins; D005903:Gliadin