title: Morphology and molecular phylogeny of two new brackish-water species of Amphisiella (Ciliophora, Hypotrichia), with notes on morphogenesis.
abstract: Two new species of the taxonomically confused genus Amphisiella were isolated from brackish-water habitats in southern China, and their morphology and morphogenesis were investigated. The genes coding for small subunit (SSU) rRNA were sequenced in each species and included in a phylogenetic analysis with all data available from nominal species of Amphisiella and related hypotrichs. Both new species are diagnosed by an elongate body shape, yellow-brown/grey-brown cell color, one kind of cortical granule, and two macronuclear nodules. The cortical granules in A. pulchra sp. n. are grouped in small clusters which are irregularly distributed both ventrally and dorsally; in A. candida sp. n., they are irregularly and sparsely distributed ventrally and form longitudinal stripes dorsally. The ontogenetic processes of both species show similarities to those of other congeners. Phylogenetic trees based on SSU rRNA gene sequences suggest that the family Amphisiellidae is a paraphyletic assemblage. The results further demonstrate that two isolates identified as Amphisiella annulata (DQ832260 and GU170843) are very likely cryptic species, and a sequence identified as A. milnei (DQ845293) may belong to a genus other than Amphisiella.
authors.affiliation: Laboratory of Protozoology, Institution of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China.
authors.forename: Xumiao
authors.initials: X
authors.lastname: Chen
authors.forename: Chen
authors.initials: C
authors.lastname: Shao
authors.forename: Xiaofeng
authors.initials: X
authors.lastname: Lin
authors.forename: John C
authors.initials: JC
authors.lastname: Clamp
authors.forename: Weibo
authors.initials: W
authors.lastname: Song
mesh_terms: D001483:Base Sequence; D002681:China; D016798:Ciliophora / Q000145:classification / Q000166:cytology* / Q000235:genetics* / Q000302:isolation & purification; D016000:Cluster Analysis; D016054:DNA, Protozoan / Q000737:chemistry / Q000235:genetics; D004275:DNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D020459:Genes, rRNA; D008853:Microscopy; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D010802:Phylogeny; D016053:RNA, Protozoan / Q000235:genetics; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D017422:Sequence Analysis, DNA; D014867:Water / Q000469:parasitology*
chemical_list: D016054:DNA, Protozoan; D004275:DNA, Ribosomal; D016053:RNA, Protozoan; D012337:RNA, Ribosomal, 18S; D014867:Water