title: A guide for integration of proteomic data standards into laboratory workflows.
abstract: The development of the HUPO-Proteomics Standards Initiative standard data formats and Minimum Information About a Proteomics Experiment guidelines facilitate coordination within the scientific community. The data standards provide a framework to exchange and share data regardless of the source instrument or software. Nevertheless there remains a view that Proteomics Standards Initiative standards are challenging to use and integrate into routine laboratory pipelines. In this article, we review the tools available for integrating the different data standards and building compliant software. These tools are focused on a range of different data types and support different scenarios, intended for software developers or end users, allowing the standards to be used in a straightforward manner.
authors: Centro Nacional de Biotecnología, CSIC, Madrid, Spain. jamedina@cnb.csic.es
authors: J Alberto
authors: JA
authors: Medina-Aunon
authors: Ritesh
authors: R
authors: Krishna
authors: Fawaz
authors: F
authors: Ghali
authors: Juan P
authors: JP
authors: Albar
authors: Andrew J
authors: AJ
authors: Jones
mesh_terms: D001330:Electronic Data Processing / Q000592:standards*; D017408:Guidelines as Topic; D033181:Information Dissemination; D019451:Information Management; D040901:Proteomics / Q000592:standards*; D012015:Reference Standards; D014584:User-Computer Interface; D057188:Workflow