title: CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data.
abstract: CONCLUSIONS
  The CluePedia Cytoscape plugin is a search tool for new markers potentially associated to pathways. CluePedia calculates linear and non-linear statistical dependencies from experimental data. Genes, proteins and miRNAs can be connected based on in silico and/or experimental information and integrated into a ClueGO network of terms/pathways. Interrelations within each pathway can be investigated, and new potential associations may be revealed through gene/protein/miRNA enrichments. A pathway-like visualization can be created using the Cerebral plugin layout. Combining all these features is essential for data interpretation and the generation of new hypotheses. The CluePedia Cytoscape plugin is user-friendly and has an expressive and intuitive visualization.
  
  
  BACKGROUND
  http://www.ici.upmc.fr/cluepedia/ and via the Cytoscape plugin manager. The user manual is available at the CluePedia website.
authors: INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, France.
authors: Gabriela
authors: G
authors: Bindea
authors: Jérôme
authors: J
authors: Galon
authors: Bernhard
authors: B
authors: Mlecnik
mesh_terms: D000818:Animals; D003198:Computer Simulation; D053263:Gene Regulatory Networks; D006801:Humans; D051379:Mice; D035683:MicroRNAs / Q000378:metabolism; D011506:Proteins / Q000235:genetics / Q000378:metabolism; D012984:Software
chemical_list: D035683:MicroRNAs; D011506:Proteins