title: Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture.
abstract: In a continuous culture under phosphate limitation the metabolism of Clostridium acetobutylicum depends on the external pH level. By comparing seven steady-state conditions between pH 5.7 and pH 4.5 we show that the switch from acidogenesis to solventogenesis occurs between pH 5.3 and pH 5.0 with an intermediate state at pH 5.1. Here, an integrative study is presented investigating how a changing external pH level affects the clostridial acetone-butanol-ethanol (ABE) fermentation pathway. This is of particular interest as the biotechnological production of n-butanol as biofuel has recently returned into the focus of industrial applications. One prerequisite is the furthering of the knowledge of the factors determining the solvent production and their integrative regulations. We have mathematically analysed the influence of pH-dependent specific enzyme activities of branch points of the metabolism on the product formation. This kinetic regulation was compared with transcriptomic regulation regarding gene transcription and the proteomic profile. Furthermore, both regulatory mechanisms were combined yielding a detailed projection of their individual and joint effects on the product formation. The resulting model represents an important platform for future developments of industrial butanol production based on C. acetobutylicum.
authors: Department of Systems Biology & Bioinformatics, Institute of Computer Science, University of Rostock, University of Rostock, Ulmenstr. 69, 18051, Rostock, Germany. thomas.millat@uni-rostock.de
authors: Thomas
authors: T
authors: Millat
authors: Holger
authors: H
authors: Janssen
authors: Hubert
authors: H
authors: Bahl
authors: Ralf-Jörg
authors: RJ
authors: Fischer
authors: Olaf
authors: O
authors: Wolkenhauer
mesh_terms: D000096:Acetone / Q000378:metabolism*; D000440:Butanols / Q000378:metabolism*; D046969:Clostridium acetobutylicum / Q000187:drug effects* / Q000235:genetics / Q000378:metabolism*; D000431:Ethanol / Q000378:metabolism*; D005285:Fermentation; D020869:Gene Expression Profiling; D015964:Gene Expression Regulation, Bacterial / Q000187:drug effects*; D006863:Hydrogen-Ion Concentration; D008660:Metabolism / Q000187:drug effects; D008962:Models, Theoretical
chemical_list: D000440:Butanols; D000096:Acetone; D000431:Ethanol