title: Bioinformatics identification of antigenic peptide: predicting the specificity of major MHC class I and II pathway players.
abstract: Bioinformatics methods for immunology have become increasingly used over the last decade and now form an integrated part of most epitope discovery projects. This wide usage has led to the confusion of defining which of the many methods to use for what problems. In this chapter, an overview is given focusing on the suite of tools developed at the Technical University of Denmark.
authors: Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark. lund@cbs.dtu.dk.
authors: Ole
authors: O
authors: Lund
authors: Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
authors: Edita
authors: E
authors: Karosiene
authors: Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Kongens Lyngby, Denmark.
authors: Claus
authors: C
authors: Lundegaard
authors: Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
authors: Mette Voldby
authors: MV
authors: Larsen
authors: Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
authors: Morten
authors: M
authors: Nielsen
mesh_terms: D020816:Amino Acid Motifs; D017951:Antigen Presentation; D000941:Antigens / Q000737:chemistry / Q000276:immunology* / Q000378:metabolism; D019295:Computational Biology / Q000379:methods*; D000939:Epitopes / Q000276:immunology; D015395:Histocompatibility Antigens Class I / Q000276:immunology*; D000949:Histocompatibility Antigens Class II / Q000276:immunology*; D006801:Humans; D020407:Internet; D010446:Peptide Fragments / Q000737:chemistry / Q000276:immunology* / Q000378:metabolism; D046988:Proteasome Endopeptidase Complex / Q000378:metabolism
chemical_list: D000941:Antigens; D000939:Epitopes; D015395:Histocompatibility Antigens Class I; D000949:Histocompatibility Antigens Class II; D010446:Peptide Fragments; D046988:Proteasome Endopeptidase Complex