Laboratory-based surveillance in the molecular era: the TYPENED model, a joint data-sharing platform for clinical and public health laboratories.
Laboratory-based surveillance, one of the pillars of monitoring infectious disease trends, relies on data produced in clinical and/or public health laboratories. Currently, diagnostic laboratories worldwide submit strains or samples to a relatively small number of reference laboratories for characterisation and typing. However, with the introduction of molecular diagnostic methods and sequencing in most of the larger diagnostic and university hospital centres in high-income countries, the distinction between diagnostic and reference/public health laboratory functions has become less clear-cut. Given these developments, new ways of networking and data sharing are needed. Assuming that clinical and public health laboratories may be able to use the same data for their own purposes when sequence-based testing and typing are used, we explored ways to develop a collaborative approach and a jointly owned database (TYPENED) in the Netherlands. The rationale was that sequence data - whether produced to support clinical care or for surveillance -can be aggregated to meet both needs. Here we describe the development of the TYPENED approach and supporting infrastructure, and the implementation of a pilot laboratory network sharing enterovirus sequences and metadata.
Department of Medical Microbiology, Division of Clinical Virology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
H G
HG
Niesters
J W
JW
Rossen
H
H
van der Avoort
D
D
Baas
K
K
Benschop
E C
EC
Claas
A
A
Kroneman
N
N
van Maarseveen
S
S
Pas
W
W
van Pelt
J C
JC
Rahamat-Langendoen
R
R
Schuurman
H
H
Vennema
L
L
Verhoef
K
K
Wolthers
M
M
Koopmans
D002984:Clinical Laboratory Information Systems; D003140:Communicable Disease Control / Q000639:trends; D003141:Communicable Diseases / Q000175:diagnosis / Q000453:epidemiology; D003299:Cooperative Behavior; D030561:Databases, Nucleic Acid; D004770:Enterovirus / Q000235:genetics; D006801:Humans; D033181:Information Dissemination; D007753:Laboratories; D008969:Molecular Sequence Data; D009426:Netherlands; D010865:Pilot Projects; D011159:Population Surveillance / Q000379:methods*; D011634:Public Health