MSMExplorer: visualizing Markov state models for biomolecule folding simulations.
CONCLUSIONS
Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science.


BACKGROUND
MSMExplorer is available for download from https://simtk.org/home/msmexplorer. The source code is made available under the GNU Lesser General Public License at https://github.com/SimTk/msmexplorer.
Department of Computer Science, Stanford University, Stanford, CA 94305, USA.
Bryce
B
Cronkite-Ratcliff
Vijay
V
Pande
D003196:Computer Graphics; D003198:Computer Simulation; D008390:Markov Chains; D008968:Molecular Conformation; D012984:Software