Expansion of microsatellites on evolutionary young Y chromosome.
Sex chromosomes are an ideal system to study processes connected with suppressed recombination. We found evidence of microsatellite expansion, on the relatively young Y chromosome of the dioecious plant sorrel (Rumex acetosa, XY1Y2 system), but no such expansion on the more ancient Y chromosomes of liverwort (Marchantia polymorpha) and human. The most expanding motifs were AC and AAC, which also showed periodicity of array length, indicating the importance of beginnings and ends of arrays. Our data indicate that abundance of microsatellites in genomes depends on the inherent expansion potential of specific motifs, which could be related to their stability and ability to adopt unusual DNA conformations. We also found that the abundance of microsatellites is higher in the neighborhood of transposable elements (TEs) suggesting that microsatellites are probably targets for TE insertions. This evidence suggests that microsatellite expansion is an early event shaping the Y chromosome where this process is not opposed by recombination, while accumulation of TEs and chromosome shrinkage predominate later.
Department of Plant Developmental Genetics, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic. kejnovsk@ibp.cz
Eduard
E
Kejnovský
Monika
M
Michalovova
Pavlina
P
Steflova
Iva
I
Kejnovska
Susana
S
Manzano
Roman
R
Hobza
Zdenek
Z
Kubat
Jan
J
Kovarik
Manuel
M
Jamilena
Boris
B
Vyskot
D001483:Base Sequence; D041322:Chromosomes, Human, Y / Q000235:genetics*; D032461:Chromosomes, Plant / Q000235:genetics*; D004251:DNA Transposable Elements / Q000235:genetics; D044704:DNA, A-Form / Q000235:genetics; D043542:DNA, Z-Form / Q000235:genetics; D019143:Evolution, Molecular; D020440:Gene Duplication; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D047008:Marchantia / Q000235:genetics*; D008677:Metaphase / Q000235:genetics; D018895:Microsatellite Repeats / Q000235:genetics*; D008957:Models, Genetic; D010507:Periodicity; D031804:Rumex / Q000235:genetics*; D017422:Sequence Analysis, DNA
D004251:DNA Transposable Elements; D044704:DNA, A-Form; D043542:DNA, Z-Form