Gaining insight into the chemistry of lipoxygenases: a computational investigation into the catalytic mechanism of (8R)-lipoxygenase.
Lipoxygenases (LOXs) are ubiquitous in nature and catalyze a range of life-essential reactions within organisms. In particular they are critical to the formation of eicosanoids, which are critical for normal cell function. However, a number of important questions about the reactivity and mechanism of these enzymes still remain. Specifically, although the initial step in the mechanism of LOXs has been well studied, little is known of subsequent steps. Thus, with use of a quantum mechanical/molecular mechanical approach, the complete catalytic mechanism of (8R)-LOX was investigated. The results have provided a better understanding of the general chemistry of LOXs as a whole. In particular, from comparisons with soybean LOX-1, it appears that the initial proton-coupled electron transfer may be very similar among all LOXs. Furthermore, LOXs appear to undergo multistate reactivity where potential spin inversion of an electron may occur either in the attack of O(2) or in the regeneration of the active site. Lastly, it is shown that with the explicit modeling of the environment, the regeneration of the active center likely occurs via the rotation of the intermediate followed by an outer-sphere [Formula: see text] transfer as opposed to the formation of a "purple intermediate" complex.
Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON, N9B 3P4, Canada.
Eric A C
EA
Bushnell
Riam
R
Jamil
James W
JW
Gauld
D000818:Animals; D037421:Anthozoa / Q000737:chemistry / Q000201:enzymology*; D001091:Arachidonate Lipoxygenases / Q000737:chemistry* / Q000378:metabolism*; D020134:Catalytic Domain; D004789:Enzyme Activation; D008084:Lipoxygenase / Q000737:chemistry / Q000378:metabolism; D062105:Molecular Docking Simulation; D010545:Peroxides / Q000737:chemistry / Q000378:metabolism; D011487:Protein Conformation; D011789:Quantum Theory; D013025:Glycine max / Q000201:enzymology
D010545:Peroxides; C049375:perhydroxyl radical; D001091:Arachidonate Lipoxygenases; D008084:Lipoxygenase