title: Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae).
abstract: BACKGROUND
  Heterococcus is a microalgal genus of Xanthophyceae (Stramenopiles) that is common and widespread in soils, especially from cold regions. Species are characterized by extensively branched filaments produced when grown on agarized culture medium. Despite the large number of species described exclusively using light microscopic morphology, the assessment of species diversity is hampered by extensive morphological plasticity.
  
  
  RESULTS
  Two independent types of molecular data, the chloroplast-encoded psbA/rbcL spacer complemented by rbcL gene and the internal transcribed spacer 2 of the nuclear rDNA cistron (ITS2), congruently recovered a robust phylogenetic structure. With ITS2 considerable sequence and secondary structure divergence existed among the eight species, but a combined sequence and secondary structure phylogenetic analysis confined to helix II of ITS2 corroborated relationships as inferred from the rbcL gene phylogeny. Intra-genomic divergence of ITS2 sequences was revealed in many strains. The 'monophyletic species concept', appropriate for microalgae without known sexual reproduction, revealed eight different species. Species boundaries established using the molecular-based monophyletic species concept were more conservative than the traditional morphological species concept. Within a species, almost identical chloroplast marker sequences (genotypes) were repeatedly recovered from strains of different origins. At least two species had widespread geographical distributions; however, within a given species, genotypes recovered from Antarctic strains were distinct from those in temperate habitats. Furthermore, the sequence diversity may correspond to adaptation to different types of habitats or climates.
  
  
  CONCLUSIONS
  We established a method and a reference data base for the unambiguous identification of species of the common soil microalgal genus Heterococcus which uses DNA sequence variation in markers from plastid and nuclear genomes. The molecular data were more reliable and more conservative than morphological data.
authors: Experimental Phycology and Culture Collection of Algae (SAG), Georg August University Göttingen, Untere Karspüle 2a, Göttingen, 37073, Germany.
authors: Nataliya
authors: N
authors: Rybalka
authors: Matthias
authors: M
authors: Wolf
authors: Robert A
authors: RA
authors: Andersen
authors: Thomas
authors: T
authors: Friedl
mesh_terms: D000864:Antarctic Regions; D002467:Cell Nucleus / Q000235:genetics; D048028:DNA, Algal / Q000235:genetics; D018742:DNA, Chloroplast / Q000235:genetics*; D021903:DNA, Ribosomal Spacer / Q000235:genetics; D019143:Evolution, Molecular; D005819:Genetic Markers; D016013:Likelihood Functions; D009690:Nucleic Acid Conformation; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D012987:Soil; D058009:Stramenopiles / Q000145:classification / Q000235:genetics*
chemical_list: D048028:DNA, Algal; D018742:DNA, Chloroplast; D021903:DNA, Ribosomal Spacer; D005819:Genetic Markers; D012987:Soil
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