title: Trapping of diffusing particles by clusters of absorbing disks on a reflecting wall with disk centers on sites of a square lattice.
abstract: A simple approximate formula is derived for the rate constant that describes steady-state flux of diffusing particles through a cluster of perfectly absorbing disks on the otherwise reflecting flat wall, assuming that the disk centers occupy neighboring sites of a square lattice. A distinctive feature of trapping by a disk cluster is that disks located at the cluster periphery shield the disks in the center of the cluster. This competition of the disks for diffusing particles makes it impossible to find an exact analytical solution for the rate constant in the general case. To derive the approximate formula, we use a recently suggested approach [A. M. Berezhkovskii, L. Dagdug, V. A. Lizunov, J. Zimmerberg, and S. M. Bezrukov, J. Chem. Phys. 136, 211102 (2012)], which is based on the replacement of the disk cluster by an effective uniform partially absorbing spot. The formula shows how the rate constant depends on the size and shape of the cluster. To check the accuracy of the formula, we compare its predictions with the values of the rate constant obtained from Brownian dynamics simulations. The comparison made for 18 clusters of various shapes and sizes shows good agreement between the theoretical predictions and numerical results.
authors: Mathematical and Statistical Computing Laboratory, Division for Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA.
authors: Alexander M
authors: AM
authors: Berezhkovskii
authors: Leonardo
authors: L
authors: Dagdug
authors: Marco-Vinicio
authors: MV
authors: Vazquez
authors: Vladimir A
authors: VA
authors: Lizunov
authors: Joshua
authors: J
authors: Zimmerberg
authors: Sergey M
authors: SM
authors: Bezrukov
mesh_terms: D004058:Diffusion; D007700:Kinetics; D008956:Models, Chemical