title: Dominance of green sulfur bacteria in the chemocline of the meromictic Lake Suigetsu, Japan, as revealed by dissimilatory sulfite reductase gene analysis.
abstract: This study investigated the spatiotemporal abundance and diversity of the α-subunit of the dissimilatory sulfite reductase gene (dsrA) in the meromictic Lake Suigetsu for assessing the sulfur-oxidizing bacterial community. The density of dsrA in the chemocline reached up to 3.1 × 10(6) copies ml(-1) in summer by means of quantitative real-time PCR and it was generally higher than deeper layers. Most of the dsrA clones sequenced were related to green sulfur bacteria such as Chlorobium phaeovibrioides, C. limicola, and C. luteolum. Below the chemocline of the lake, we also detected other dsrA clones related to the purple sulfur bacterium Halochromatium salexigens and some branching lineages of diverse sequences that were related to chemotrophic sulfur bacterial species such as Magnetospirillum gryphiswaldense, Candidatus Ruthia magnifica, and Candidatus Thiobios zoothamnicoli. The abundance and community compositions of sulfur-oxidizing bacteria changed depending on the water depth and season. This study indicated that the green sulfur bacteria dominated among sulfur-oxidizing bacterial population in the chemocline of Lake Suigetsu and that certain abiotic environmental variables were important factors that determined sulfur bacterial abundance and community structure.
authors: Department of Marine Bioscience, Fukui Prefectural University, Obama, Fukui 917-0003, Japan. s1094001@s.fpu.ac.jp
authors: Yumi
authors: Y
authors: Mori
authors: Takafumi
authors: T
authors: Kataoka
authors: Takahiko
authors: T
authors: Okamura
authors: Ryuji
authors: R
authors: Kondo
mesh_terms: D019414:Chlorobi / Q000235:genetics / Q000302:isolation & purification*; D002841:Chromatiaceae / Q000235:genetics; D050885:Hydrogensulfite Reductase / Q000235:genetics*; D007564:Japan; D060106:Lakes / Q000737:chemistry / Q000382:microbiology*; D008969:Molecular Sequence Data; D010802:Phylogeny; D060888:Real-Time Polymerase Chain Reaction
chemical_list: D050885:Hydrogensulfite Reductase