title: Computational modeling of optical projection tomographic microscopy using the finite difference time domain method.
abstract: We present a method for modeling image formation in optical projection tomographic microscopy (OPTM) using high numerical aperture (NA) condensers and objectives. Similar to techniques used in computed tomography, OPTM produces three-dimensional, reconstructed images of single cells from two-dimensional projections. The model is capable of simulating axial scanning of a microscope objective to produce projections, which are reconstructed using filtered backprojection. Simulation of optical scattering in transmission optical microscopy is designed to analyze all aspects of OPTM image formation, such as degree of specimen staining, refractive-index matching, and objective scanning. In this preliminary work, a set of simulations is performed to examine the effect of changing the condenser NA, objective scan range, and complex refractive index on the final reconstruction of a microshell with an outer radius of 1.5 μm and an inner radius of 0.9 μm. The model lays the groundwork for optimizing OPTM imaging parameters and triaging efforts to further improve the overall system design. As the model is expanded in the future, it will be used to simulate a more realistic cell, which could lead to even greater impact.
authors: Department of Bioengineering, University of Washington, Human Photonics Laboratory, Fluke Hall, Seattle, Washington 98195, USA. ryancoe@uw.edu
authors: Ryan L
authors: RL
authors: Coe
authors: Eric J
authors: EJ
authors: Seibel
mesh_terms: D003198:Computer Simulation; D021621:Imaging, Three-Dimensional / Q000379:methods*; D008853:Microscopy / Q000379:methods*; D013997:Time Factors; D041622:Tomography, Optical / Q000379:methods*