title: Similar concentration and extraction recoveries allow for use of turnip crinkle virus as a process control for enteroviruses in water.
abstract: Enteric viruses are etiological agents of waterborne disease that may be detected using molecular techniques such as PCR. However, processing water samples in preparation for PCR typically involves concentration of samples and extraction of nucleic acids, steps that have low and variable recovery efficiencies. This study evaluated a plant virus, turnip crinkle virus (TCV), for its ability to serve as a process control for human enteroviruses during concentration and extraction procedures. Enteroviruses and TCV have similar sizes and morphologies, and both contain single stranded, positive-sense RNA genomes. Results from the study demonstrate that the tested viruses experience similar losses during sample processing. Virus recoveries averaged 0.03% for EV and 0.02% for TCV from DI water, and 0.004% for EV and 0.009% for TCV from a creek sample. Surface water and wastewater samples from around the U.S. were evaluated for the presence of TCV to ensure the virus is not present in environmental samples. All were negative. With similar recovery efficiencies to EV, TCV may be a suitable process control for enteroviruses in environmental water samples in the U.S. Use of process controls as proposed in this study would allow better detection and quantitation methods to be employed in water quality monitoring.
authors: Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27599-7431, USA. jen_shields@ncsu.edu
authors: Jennifer
authors: J
authors: Gentry-Shields
authors: Jill R
authors: JR
authors: Stewart
mesh_terms: D015415:Biomarkers; D019184:Carmovirus / Q000302:isolation & purification*; D004770:Enterovirus / Q000302:isolation & purification*; D012680:Sensitivity and Specificity; D013048:Specimen Handling / Q000379:methods* / Q000592:standards; D013194:Staining and Labeling / Q000379:methods; D014481:United States; D014773:Virology / Q000379:methods* / Q000592:standards; D014871:Water Microbiology / Q000592:standards*
chemical_list: D015415:Biomarkers