title: The dynamics of gut-associated microbial communities during inflammation.
abstract: Our intestine is host to a large microbial community (microbiota) that educates the immune system and confers niche protection. Profiling of the gut-associated microbial community reveals a dominance of obligate anaerobic bacteria in healthy individuals. However, intestinal inflammation is associated with a disturbance of the microbiota-known as dysbiosis-that often includes an increased prevalence of facultative anaerobic bacteria. This group contains potentially harmful bacterial species, the bloom of which can further exacerbate inflammation. Here, we review the mechanisms that generate changes in the microbial community structure during inflammation. One emerging concept is that electron acceptors generated as by-products of the host inflammatory response feed facultative anaerobic bacteria selectively, thereby increasing their prevalence within the community. This new paradigm has broad implications for understanding dysbiosis during gut inflammation and identifies potential targets for intervention strategies.
authors.affiliation: Department of Medical Microbiology & Immunology, School of Medicine, University of California at Davis, One Shields Avenue, Davis, CA 95616, USA.
authors.forename: Sebastian E
authors.initials: SE
authors.lastname: Winter
authors.forename: Christopher A
authors.initials: CA
authors.lastname: Lopez
authors.forename: Andreas J
authors.initials: AJ
authors.lastname: Bäumler
mesh_terms: D000818:Animals; D004755:Enterobacteriaceae / Q000502:physiology*; D005759:Gastroenteritis / Q000276:immunology / Q000382:microbiology* / Q000473:pathology; D041981:Gastrointestinal Tract / Q000276:immunology / Q000382:microbiology* / Q000473:pathology; D054884:Host-Pathogen Interactions; D006801:Humans; D054892:Metagenome / Q000276:immunology*; D037521:Virulence Factors / Q000235:genetics
chemical_list: D037521:Virulence Factors