title: Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle.
abstract: In order to characterise the dynamics of proteins, a well-established method is to incorporate experimental parameters as replica-averaged structural restraints into molecular dynamics simulations. Here, we justify this approach in the case of interproton distance information provided by nuclear Overhauser effects by showing that it generates ensembles of conformations according to the maximum entropy principle. These results indicate that the use of replica-averaged structural restraints in molecular dynamics simulations, given a force field and a set of experimental data, can provide an accurate approximation of the unknown Boltzmann distribution of a system.
authors.affiliation: Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.
authors.forename: Andrea
authors.initials: A
authors.lastname: Cavalli
authors.forename: Carlo
authors.initials: C
authors.lastname: Camilloni
authors.forename: Michele
authors.initials: M
authors.lastname: Vendruscolo
mesh_terms: D019277:Entropy; D056004:Molecular Dynamics Simulation; D015394:Molecular Structure