title: In search of actionable targets for agrigenomics and microalgal biofuel production: sequence-structural diversity studies on algal and higher plants with a focus on GPAT protein.
abstract: The triacylglycerol (TAG) pathway provides several targets for genetic engineering to optimize microalgal lipid productivity. GPAT (glycerol-3-phosphate acyltransferase) is a crucial enzyme that catalyzes the initial step of TAG biosynthesis. Despite many recent biochemical studies, a comprehensive sequence-structure analysis of GPAT across diverse lipid-yielding organisms is lacking. Hence, we performed a comparative genomic analysis of plastid-located GPAT proteins from 7 microalgae and 3 higher plants species. The close evolutionary relationship observed between red algae/diatoms and green algae/plant lineages in the phylogenetic tree were further corroborated by motif and gene structure analysis. The predicted molecular weight, amino acid composition, Instability Index, and hydropathicity profile gave an overall representation of the biochemical features of GPAT protein across the species under study. Furthermore, homology models of GPAT from Chlamydomonas reinhardtii, Arabidopsis thaliana, and Glycine max provided deep insights into the protein architecture and substrate binding sites. Despite low sequence identity found between algal and plant GPATs, the developed models exhibited strikingly conserved topology consisting of 14α helices and 9β sheets arranged in two domains. However, subtle variations in amino acids of fatty acyl binding site were identified that might influence the substrate selectivity of GPAT. Together, the results will provide useful resources to understand the functional and evolutionary relationship of GPAT and potentially benefit in development of engineered enzyme for augmenting algal biofuel production.
authors.affiliation: Bioresources Engineering Department, CSIR-Institute of Minerals and Materials Technology, Bhubaneswar 751 013, Odisha, India.
authors.forename: Namrata
authors.initials: N
authors.lastname: Misra
authors.forename: Prasanna Kumar
authors.initials: PK
authors.lastname: Panda
mesh_terms: D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D001665:Binding Sites; D056804:Biofuels; D020134:Catalytic Domain; D000460:Chlorophyta / Q000235:genetics / Q000378:metabolism; D005227:Fatty Acids / Q000737:chemistry / Q000378:metabolism; D023061:Gene Order; D023281:Genomics; D005992:Glycerol-3-Phosphate O-Acyltransferase / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D042541:Intracellular Space / Q000378:metabolism; D058086:Microalgae / Q000145:classification / Q000235:genetics* / Q000378:metabolism*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010802:Phylogeny; D010944:Plants / Q000235:genetics / Q000378:metabolism; D056510:Position-Specific Scoring Matrices; D011485:Protein Binding; D011487:Protein Conformation; D021381:Protein Transport; D015203:Reproducibility of Results; D000461:Rhodophyta / Q000235:genetics / Q000378:metabolism; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid; D014280:Triglycerides / Q000096:biosynthesis
chemical_list: D056804:Biofuels; D005227:Fatty Acids; D014280:Triglycerides; D005992:Glycerol-3-Phosphate O-Acyltransferase