title: Charting the cellular and extracellular proteome analysis of Brevibacterium linens DSM 20158 with unsequenced genome by mass spectrometry-driven sequence similarity searches.
abstract: Brevibacterium linens DSM 20158 is an industrially important actinobacterium which is well-known for the production of amino acids and enzymes. However, as this strain has an unsequenced genome, there is no detailed information regarding its proteome although another strain of this microbe, BL2, has a shotgun genome sequence. However, this still does not cover the entire scope of its proteome. The present study is carried out by first identifying proteins by homology matches using the Mascot search algorithm followed by an advanced approach using de novo sequencing and MS BLAST to expand the B. linens proteome. The proteins identified in the secretome and cellular portion appear to be involved in various metabolic and physiological processes of this unsequenced organism. This study will help to enhance the usability of this strain of B. linens in different areas of research in the future rather than mainly in the food industries.
  
  
  CONCLUSIONS
  The present study describes the construction of the first detailed proteomic reference map of B. linens DSM 20158 with unsequenced genome by comparative proteome research analysis. This opens new horizons in proteomics to understand the role of proteins involved in the metabolism and physiology of other organisms with unsequenced genomes.
authors.affiliation: Biomedical Sciences Research Complex, University of St. Andrews, St. Andrews, Fife KY16 9ST, Scotland, United Kingdom.
authors.forename: Khadija
authors.initials: K
authors.lastname: Shabbiri
authors.forename: Catherine H
authors.initials: CH
authors.lastname: Botting
authors.forename: Ahmad
authors.initials: A
authors.lastname: Adnan
authors.forename: Matthew
authors.initials: M
authors.lastname: Fuszard
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism; D001951:Brevibacterium / Q000235:genetics / Q000378:metabolism; D016680:Genome, Bacterial / Q000502:physiology*; D013058:Mass Spectrometry; D020543:Proteome / Q000235:genetics / Q000378:metabolism; D040901:Proteomics / Q000379:methods*; D016415:Sequence Alignment / Q000379:methods; D020539:Sequence Analysis, Protein / Q000379:methods*
chemical_list: D001426:Bacterial Proteins; D020543:Proteome