title: Relationship between a point mutation S97C in CK1δ protein and its affect on ATP-binding affinity.
abstract: CK1δ (Casein kinase I isoform delta) is a member of CK1 kinase family protein that mediates neurite outgrowth and the function as brain-specific microtubule-associated protein. ATP binding kinase domain of CK1δ is essential for regulating several key cell cycle signal transduction pathways. Mutation in CK1δ protein is reported to cause cancers and affects normal brain development. S97C mutation in kinase domain of CK1δ protein has been involved to induce breast cancer and ductal carcinoma. We performed molecular docking studies to examine the effect of this mutation on its ATP-binding affinity. Further, we conducted molecular dynamics simulations to understand the structural consequences of S97C mutation over the kinase domain of CK1δ protein. Docking results indicated the loss of ATP-binding affinity of mutant structure, which were further rationalized by molecular dynamics simulations, where a notable loss in 3-D conformation of CK1δ kinase domain was observed in mutant as compared to native. Our results explained the underlying molecular mechanism behind the observed cancer associated phenotype caused by S97C mutation in CK1δ protein.
authors.affiliation: a Bioinformatics Division , School of Bio Sciences and Technology, Vellore Institute of Technology University , Vellore , 632014 , Tamil Nadu , India .
authors.forename: Ambuj
authors.initials: A
authors.lastname: Kumar
authors.forename: Vidya
authors.initials: V
authors.lastname: Rajendran
authors.forename: Rao
authors.initials: R
authors.lastname: Sethumadhavan
authors.forename: Rituraj
authors.initials: R
authors.lastname: Purohit
mesh_terms: D000255:Adenosine Triphosphate / Q000378:metabolism*; D001943:Breast Neoplasms / Q000235:genetics; D018270:Carcinoma, Ductal, Breast / Q000235:genetics; D048148:Casein Kinase Idelta / Q000235:genetics* / Q000378:metabolism; D003198:Computer Simulation; D003545:Cysteine / Q000235:genetics*; D005260:Female; D006801:Humans; D062105:Molecular Docking Simulation; D056004:Molecular Dynamics Simulation; D017354:Point Mutation; D012694:Serine / Q000235:genetics*; D015398:Signal Transduction
chemical_list: D012694:Serine; D000255:Adenosine Triphosphate; D048148:Casein Kinase Idelta; D003545:Cysteine