title: Glycerol modulates water permeation through Escherichia coli aquaglyceroporin GlpF.
abstract: Among aquaglyceroporins that transport both water and glycerol across the cell membrane, Escherichia coli glycerol uptake facilitator (GlpF) is the most thoroughly studied. However, one question remains: Does glycerol modulate water permeation? This study answers this fundamental question by determining the three-dimensional potential of mean force of glycerol along the permeation path through GlpF's conducting pore. There is a deep well near the Asn-Pro-Ala (NPA) motifs (6.5kcal/mol below the bulk level) and a barrier near the selectivity filter (10.1kcal/mol above the well bottom). This profile owes its existence to GlpF's perfect steric arrangement: The glycerol-protein van der Waals interactions are attractive near the NPA but repulsive elsewhere in the conducting pore. In light of the single-file nature of waters and glycerols lining up in GlpF's amphipathic pore, it leads to the following conclusion: Glycerol modulates water permeation in the μM range. At mM concentrations, GlpF is glycerol-saturated and a glycerol residing in the well occludes the conducting pore. Therefore, water permeation is fully correlated to glycerol dissociation that has an Arrhenius activation barrier of 6.5kcal/mol. Validation of this theory is based on the existent in vitro data, some of which have not been given the proper attention they deserved: The Arrhenius activation barriers were found to be 7kcal/mol for water permeation and 9.6kcal/mol for glycerol permeation; The presence of up to 100mM glycerol did not affect the kinetics of water transport with very low permeability, in apparent contradiction with the existent theories that predicted high permeability (0M glycerol).
authors.affiliation: Department of Physics, University of Texas at San Antonio, San Antonio, TX 78249, USA. Liao.Chen@utsa.edu
authors.forename: Liao Y
authors.initials: LY
authors.lastname: Chen
mesh_terms: D020346:Aquaporins / Q000378:metabolism*; D001692:Biological Transport; D002463:Cell Membrane Permeability / Q000187:drug effects*; D003451:Cryoprotective Agents / Q000494:pharmacology*; D004926:Escherichia coli / Q000187:drug effects / Q000254:growth & development / Q000378:metabolism*; D029968:Escherichia coli Proteins / Q000378:metabolism*; D005990:Glycerol / Q000494:pharmacology*; D008051:Lipid Bilayers / Q000378:metabolism; D008958:Models, Molecular; D009842:Oligopeptides / Q000494:pharmacology; D011487:Protein Conformation; D013816:Thermodynamics; D014867:Water / Q000378:metabolism*
chemical_list: D020346:Aquaporins; D003451:Cryoprotective Agents; D029968:Escherichia coli Proteins; D008051:Lipid Bilayers; D009842:Oligopeptides; C550288:asparagine-proline-alanine; D014867:Water; C078043:GlpF protein, E coli; D005990:Glycerol