title: PI2PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.
abstract: PI2PE (http://pipe.sc.fsu.edu) is a suite of four web servers for predicting a variety of folding- and binding-related properties of proteins. These include the solvent accessibility of amino acids upon protein folding, the amino acids forming the interfaces of protein-protein and protein-nucleic acid complexes, and the binding rate constants of these complexes. Three of the servers debuted in 2007, and have garnered ~2,500 unique users and finished over 30,000 jobs. The functionalities of these servers are now enhanced, and a new sever, for predicting the binding rate constants, is added. Together, these web servers form a pipeline from protein sequence to tertiary structure, then to quaternary structure, and finally to binding kinetics.
authors.affiliation: Department of Physics and Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, USA.
authors.forename: Sanbo
authors.initials: S
authors.lastname: Qin
authors.forename: Huan-Xiang
authors.initials: HX
authors.lastname: Zhou
keywords: association rate constant; protein-DNA interaction site; protein-protein interaction site; solvent accessibility