title: Gene expression networks underlying ovarian development in wild largemouth bass (Micropterus salmoides).
abstract: BACKGROUND
  Oocyte maturation in fish involves numerous cell signaling cascades that are activated or inhibited during specific stages of oocyte development. The objectives of this study were to characterize molecular pathways and temporal gene expression patterns throughout a complete breeding cycle in wild female largemouth bass to improve understanding of the molecular sequence of events underlying oocyte maturation.
  
  
  METHODS
  Transcriptomic analysis was performed on eight morphologically diverse stages of the ovary, including primary and secondary stages of oocyte growth, ovulation, and atresia. Ovary histology, plasma vitellogenin, 17β-estradiol, and testosterone were also measured to correlate with gene networks.
  
  
  RESULTS
  Global expression patterns revealed dramatic differences across ovarian development, with 552 and 2070 genes being differentially expressed during both ovulation and atresia respectively. Gene set enrichment analysis (GSEA) revealed that early primary stages of oocyte growth involved increases in expression of genes involved in pathways of B-cell and T-cell receptor-mediated signaling cascades and fibronectin regulation. These pathways as well as pathways that included adrenergic receptor signaling, sphingolipid metabolism and natural killer cell activation were down-regulated at ovulation. At atresia, down-regulated pathways included gap junction and actin cytoskeleton regulation, gonadotrope and mast cell activation, and vasopressin receptor signaling and up-regulated pathways included oxidative phosphorylation and reactive oxygen species metabolism. Expression targets for luteinizing hormone signaling were low during vitellogenesis but increased 150% at ovulation. Other networks found to play a significant role in oocyte maturation included those with genes regulated by members of the TGF-beta superfamily (activins, inhibins, bone morphogenic protein 7 and growth differentiation factor 9), neuregulin 1, retinoid X receptor, and nerve growth factor family.
  
  
  CONCLUSIONS
  This study offers novel insight into the gene networks underlying vitellogenesis, ovulation and atresia and generates new hypotheses about the cellular pathways regulating oocyte maturation.
authors.affiliation: Department of Physiological Sciences and Center for Environmental and Human Toxicology, University of Florida, Gainesville, Florida, United States of America.
authors.forename: Christopher J
authors.initials: CJ
authors.lastname: Martyniuk
authors.forename: Melinda S
authors.initials: MS
authors.lastname: Prucha
authors.forename: Nicholas J
authors.initials: NJ
authors.lastname: Doperalski
authors.forename: Philipp
authors.initials: P
authors.lastname: Antczak
authors.forename: Kevin J
authors.initials: KJ
authors.lastname: Kroll
authors.forename: Francesco
authors.initials: F
authors.lastname: Falciani
authors.forename: David S
authors.initials: DS
authors.lastname: Barber
authors.forename: Nancy D
authors.initials: ND
authors.lastname: Denslow
mesh_terms: D000818:Animals; D001492:Bass / Q000235:genetics* / Q000378:metabolism*; D016000:Cluster Analysis; D019295:Computational Biology; D004967:Estrogens / Q000378:metabolism; D005260:Female; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental; D053263:Gene Regulatory Networks; D039081:Integrin alpha5beta1 / Q000378:metabolism; D008297:Male; D009866:Oogenesis / Q000235:genetics*; D010053:Ovary / Q000033:anatomy & histology / Q000166:cytology / Q000378:metabolism*; D012098:Reproduction / Q000235:genetics; D015398:Signal Transduction; D014819:Vitellogenins / Q000378:metabolism; D051176:beta Catenin / Q000378:metabolism
chemical_list: D004967:Estrogens; D039081:Integrin alpha5beta1; D014819:Vitellogenins; D051176:beta Catenin