title: Phylogenetic analysis of lack gene sequences for 22 Chinese Leishmania isolates.
abstract: OBJECTIVE
  The phylogenetic relationships between Chinese Leishmania strains were investigated using lack (Leishmania homolog of receptors for activated protein kinase C) gene sequences, and the power of this gene was assessed for understanding the epidemiology and population genetics of Leishmania.
  
  
  METHODS
  The lack gene sequences from Leishmania isolates were sequenced after polymerase chain reaction (PCR) amplification. Sequence alignment was performed and a phylogenetic tree was created using the MEGA 5.0 software program.
  
  
  RESULTS
  Sequences of 850 bp were analyzed for each of the Leishmania strains collected from different locations in China, and minor differences in sequences were noted between the strains. Four distinct groups formed according to differences in the sequences of the lack gene. Group I consisted of 12 isolates from Shandong, Xinjiang, Gansu and Sichuan. These strains are part of the Leishmania donovani complex and are pathogenic to humans and canines. Group II included six isolates from Xinjiang and a reference strain, Leishmania turanica. Group III contained two isolates (one from a sand fly in Xinjiang and one from a rodent in Inner Mongolia) and they were identified as Leishmania gerbilli. Finally, group IV contained a strain from a sand fly in Xinjiang and a strain from a lizard in Inner Mongolia, and these strains were found to be Sauroleishmania.
  
  
  CONCLUSIONS
  The Chinese Leishmania isolates formed four groups based on differences in the sequences of the lack gene, and this result is consistent with previous studies. Phylogenetic analysis suggests that the Leishmania isolates from China are more complicated than previously thought. There is consensus between genetic clustering and identification using classical methods, which means that the lack gene yields polymorphic information that could be used for genotyping Leishmania isolates.
authors.affiliation: Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, PR China.
authors.forename: Chun-Ying
authors.initials: CY
authors.lastname: Zhang
authors.forename: Juan
authors.initials: J
authors.lastname: Zhou
authors.forename: Bin
authors.initials: B
authors.lastname: Ding
authors.forename: Xiao-Jun
authors.initials: XJ
authors.lastname: Lu
authors.forename: Yu-Ling
authors.initials: YL
authors.lastname: Xiao
authors.forename: Xiao-Su
authors.initials: XS
authors.lastname: Hu
authors.forename: Ying
authors.initials: Y
authors.lastname: Ma
mesh_terms: D000818:Animals; D000953:Antigens, Protozoan / Q000235:genetics*; D006801:Humans; D007891:Leishmania / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D008969:Molecular Sequence Data; D010802:Phylogeny; D015800:Protozoan Proteins / Q000235:genetics*; D017422:Sequence Analysis, DNA
chemical_list: D000953:Antigens, Protozoan; D015800:Protozoan Proteins; C093139:LACK antigen, Leishmania