title: Organ-specific proteome analysis for identification of abiotic stress response mechanism in crop.
abstract: Abiotic stresses, such as flooding, drought, salinity, and high/low temperatures, are the major constraints that global crop production faces at present. Plants respond to a stress by modulating abundance of candidate proteins, either by up-regulating expression or by the synthesizing novel proteins primarily associated with plant defense system. The cellular mechanisms of stress sensing and signal transduction into cellular organelles have been reported. Nevertheless, the responses of plant cells to abiotic stresses differ in each organ. As the correlation between the expression of mRNAs and the abundance of their corresponding proteins is difficult to assess in specific organs, proteomics techniques provide one of the best options for the functional analysis of translated regions of the genome. The present review summarizes the organ-specific proteome analyses for better understanding of the response mechanisms of crops to abiotic stresses, including flooding, drought, and salinity. The differential organ-specific responses against each of these stresses are discussed in detail to provide new insights into plant stress response mechanisms at protein level.
authors.affiliation: National Institute of Crop Science, National Agriculture and Food Research Organization Tsukuba, Japan.
authors.forename: Setsuko
authors.initials: S
authors.lastname: Komatsu
authors.forename: Zahed
authors.initials: Z
authors.lastname: Hossain
keywords: abiotic stress; crop; drought; flooding; organ-specific; proteomics; salinity
references.citation: Proteomics. 2005 Jan;5(1):235-44
references.pmid: 15672456
references.citation: Plant Physiol. 2005 Mar;137(3):949-60
references.pmid: 15728345
references.citation: Plant J. 2004 Sep;39(5):715-33
references.pmid: 15315634
references.citation: J Proteomics. 2009 Apr 13;72(3):325-36
references.pmid: 19022415
references.citation: Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8696-700
references.pmid: 1356267
references.citation: Amino Acids. 2012 Nov;43(5):2137-52
references.pmid: 22543724
references.citation: Plant J. 2001 Feb;25(4):463-71
references.pmid: 11260502
references.citation: J Exp Bot. 2006;57(5):1109-18
references.pmid: 16513811
references.citation: Proteomics. 2005 Mar;5(4):950-60
references.pmid: 15712235
references.citation: J Proteome Res. 2010 Aug 6;9(8):3989-4002
references.pmid: 20540568
references.citation: Plant J. 2009 Dec;60(5):795-804
references.pmid: 19682288
references.citation: PLoS One. 2012;7(7):e41985
references.pmid: 22848682
references.citation: Am J Bot. 1984 Oct;71(9):1308-14
references.pmid: 11540826
references.citation: J Proteome Res. 2006 Feb;5(2):396-403
references.pmid: 16457606
references.citation: Phytochemistry. 2009 May;70(8):988-1002
references.pmid: 19560791
references.citation: Physiol Plant. 2007 Dec;131(4):555-70
references.pmid: 18251847
references.citation: J Proteome Res. 2008 Nov;7(11):4858-68
references.pmid: 18855355
references.citation: J Biol Chem. 1983 Nov 25;258(22):13752-8
references.pmid: 6417133
references.citation: J Proteomics. 2012 Mar 16;75(6):1906-23
references.pmid: 22245419
references.citation: Cell. 2009 Aug 21;138(4):795-806
references.pmid: 19664813
references.citation: J Biosci. 2010 Mar;35(1):49-62
references.pmid: 20413909
references.citation: Tree Physiol. 2008 Aug;28(8):1189-97
references.pmid: 18519250
references.citation: Proteomics. 2010 Dec;10(24):4441-9
references.pmid: 21136597
references.citation: Proteomics. 2002 Sep;2(9):1131-45
references.pmid: 12362332
references.citation: Trends Plant Sci. 2004 May;9(5):244-52
references.pmid: 15130550
references.citation: Bioessays. 1996 Jul;18(7):533-40
references.pmid: 8757932
references.citation: Proteomics. 2009 Nov;9(21):4889-907
references.pmid: 19862761
references.citation: J Proteome Res. 2012 Jan 1;11(1):348-58
references.pmid: 22047206
references.citation: Plant Cell Environ. 2002 Feb;25(2):195-210
references.pmid: 11841663
references.citation: Physiol Plant. 2008 Nov;134(3):547-58
references.pmid: 18636989
references.citation: J Plant Physiol. 2009 Feb 15;166(3):233-45
references.pmid: 18778874
references.citation: Biosci Biotechnol Biochem. 2009 Dec;73(12):2762-5
references.pmid: 19966459
references.citation: Proteomics. 2005 Apr;5(6):1624-33
references.pmid: 15800971
references.citation: Expert Rev Proteomics. 2011 Apr;8(2):165-73
references.pmid: 21501010
references.citation: J Proteomics. 2012 Oct 22;75(18):5706-23
references.pmid: 22850269
references.citation: Plant Cell Rep. 2011 May;30(5):807-23
references.pmid: 21298270
references.citation: Plant Physiol. 1988 Apr;86(4):1304-9
references.pmid: 16666071
references.citation: Proteomics. 2006 Apr;6(8):2542-54
references.pmid: 16612795
references.citation: Ann Bot. 2006 May;97(5):895-902
references.pmid: 16533830
references.citation: Proteomics. 2007 Apr;7(8):1293-302
references.pmid: 17380535
references.citation: Plant Mol Biol. 2009 Feb;69(3):287-98
references.pmid: 19002761
references.citation: Proteomics. 2011 May;11(9):1707-19
references.pmid: 21438152
references.citation: Nature. 2013 Feb 14;494(7436):266-70
references.pmid: 23334424
references.citation: Proteomics. 2004 Jul;4(7):2072-81
references.pmid: 15221768
references.citation: New Phytol. 2004 Jun;162(3):671-681
references.pmid: 33873761
references.citation: Rapid Commun Mass Spectrom. 2012 Aug 15;26(15):1649-60
references.pmid: 22730086
references.citation: Phytochemistry. 2007 Feb;68(4):426-37
references.pmid: 17169384
references.citation: Ann Bot. 2003 Jan;91 Spec No:119-27
references.pmid: 12509333
references.citation: Proteomics. 2007 Oct;7(20):3788-99
references.pmid: 17828791
references.citation: Mol Cell Proteomics. 2012 Apr;11(4):M111.014662
references.pmid: 22190732
references.citation: Funct Plant Biol. 2006 Feb;33(1):91-101
references.pmid: 32689217
references.citation: J Neurosurg. 1997 Apr;86(4):624-8
references.pmid: 9120625
references.citation: Protein Pept Lett. 2011 Sep;18(9):912-24
references.pmid: 21443497
references.citation: J Proteomics. 2012 Mar 16;75(6):1867-85
references.pmid: 22245046
references.citation: Mol Biol Rep. 1976 Nov;3(2):151-6
references.pmid: 796686
references.citation: Plant Physiol. 2007 Nov;145(3):575-88
references.pmid: 17766395
references.citation: J Proteome Res. 2012 Jan 1;11(1):37-48
references.pmid: 22029473
references.citation: J Bacteriol. 1990 Sep;172(9):5112-8
references.pmid: 2394679
references.citation: Biochem Biophys Res Commun. 2009 Jan 30;379(1):133-8
references.pmid: 19103168
references.citation: New Phytol. 2002 Mar;153(3):449-460
references.pmid: 33863219
references.citation: J Biol Chem. 1995 Dec 8;270(49):29229-35
references.pmid: 7493952
references.citation: J Proteome Res. 2012 Jan 1;11(1):372-85
references.pmid: 22136409
references.citation: J Proteome Res. 2009 Jul;8(7):3331-45
references.pmid: 19445527
references.citation: Biochem Biophys Res Commun. 1993 Feb 15;190(3):1130-5
references.pmid: 8439313
references.citation: J Exp Bot. 2007;58(2):291-300
references.pmid: 17210992
references.citation: Proteome Sci. 2010 Mar 29;8:19
references.pmid: 20350314
references.citation: Peptides. 2009 Dec;30(12):2108-17
references.pmid: 19747515
references.citation: Nat Methods. 2012 May 30;9(6):555-66
references.pmid: 22669653
references.citation: Annu Rev Phytopathol. 1996;34:325-46
references.pmid: 15012546
references.citation: Plant Physiol. 1980 Aug;66(2):267-71
references.pmid: 16661419
references.citation: Nat Protoc. 2012 Dec;7(12):2144-58
references.pmid: 23196971
references.citation: Plant Physiol. 2003 Mar;131(3):1104-23
references.pmid: 12644662
references.citation: J Proteome Res. 2009 Apr;8(4):2058-69
references.pmid: 19714819
references.citation: Phytochemistry. 2004 Jun;65(12):1733-44
references.pmid: 15276434
references.citation: Biochim Biophys Acta. 2010 Jan;1804(1):124-36
references.pmid: 19786127
references.citation: J Proteome Res. 2009 Oct;8(10):4766-78
references.pmid: 19658438
references.citation: Plant Sci. 2012 Apr;185-186:250-8
references.pmid: 22325888
references.citation: Biochim Biophys Acta. 2008 Jul-Aug;1778(7-8):1653-64
references.pmid: 18371297
references.citation: Plant Cell Physiol. 2008 Feb;49(2):226-41
references.pmid: 18178965