title: Effect of glycerol-water binary mixtures on the structure and dynamics of protein solutions.
abstract: We have performed 20 ns of fully atomistic molecular dynamics simulations of Hen Egg-White Lysozyme in 0, 10, 20, 30, and 100% by weight of glycerol in water to better understand the microscopic physics behind the bioprotection offered by glycerol to naturally occuring biological systems. The solvent exposure of protein surface residues changes when glycerol is introduced. The dynamic behavior of the protein, as quantified by the incoherent intermediate scattering function, shows a nonmonotonic dependence on glycerol content. The fluctuations of the protein residues with respect to each other were found to be similar in all water-containing solvents, but different from the pure glycerol case. The increase in the number of protein-glycerol hydrogen bonds in glycerol-water binary mixtures explains the slowing down of protein dynamics as the glycerol content increases. We also explored the dynamic behavior of the hydration layer. We show that the short length scale dynamics of this layer are insensitive to glycerol concentration. However, the long length scale behavior shows a significant dependence on glycerol content. We also provide insights into the behavior of bound and mobile water molecules.
authors.affiliation: a Computational Biology and Bioinformatics Group, Oak Ridge National Laboratory , One Bethel Valley Road, Oak Ridge , TN , 37830 , USA .
authors.forename: Pavan K
authors.initials: PK
authors.lastname: Ghattyvenkatakrishna
authors.forename: Gustavo A
authors.initials: GA
authors.lastname: Carri
mesh_terms: D005990:Glycerol / Q000737:chemistry*; D006860:Hydrogen Bonding; D056004:Molecular Dynamics Simulation; D009113:Muramidase / Q000737:chemistry*; D012996:Solutions; D012997:Solvents; D014867:Water / Q000737:chemistry*
chemical_list: D012996:Solutions; D012997:Solvents; D014867:Water; C421864:hen egg lysozyme; D009113:Muramidase; D005990:Glycerol