title: Average conformations determined from PRE data provide high-resolution maps of transient tertiary interactions in disordered proteins.
abstract: In the last decade it has become evident that disordered states of proteins play important physiological and pathological roles and that the transient tertiary interactions often present in these systems can play a role in their biological activity. The structural characterization of such states has so far largely relied on ensemble representations, which in principle account for both their local and global structural features. However, these approaches are inherently of low resolution due to the large number of degrees of freedom of conformational ensembles and to the sparse nature of the experimental data used to determine them. Here, we overcome these limitations by showing that tertiary interactions in disordered states can be mapped at high resolution by fitting paramagnetic relaxation enhancement data to a small number of conformations, which can be as low as one. This result opens up the possibility of determining the topology of cooperatively collapsed and hidden folded states when these are present in the vast conformational landscape accessible to disordered states of proteins. As a first application, we study the long-range tertiary interactions of acid-unfolded apomyoglobin from experimentally measured paramagnetic relaxation enhancement data.
authors.affiliation: Joint BSC-IRB Research Programme in Computational Biology, Institute for Research in Biomedicine IRB Barcelona, Barcelona, Spain.
authors.forename: Jordi
authors.initials: J
authors.lastname: Silvestre-Ryan
authors.forename: Carlos W
authors.initials: CW
authors.lastname: Bertoncini
authors.forename: Robert Bryn
authors.initials: RB
authors.lastname: Fenwick
authors.forename: Santiago
authors.initials: S
authors.lastname: Esteban-Martin
authors.forename: Xavier
authors.initials: X
authors.lastname: Salvatella
mesh_terms: D000595:Amino Acid Sequence; D001059:Apoproteins / Q000737:chemistry*; D006801:Humans; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D009211:Myoglobin / Q000737:chemistry*; D011487:Protein Conformation; D017510:Protein Folding
chemical_list: D001059:Apoproteins; D009211:Myoglobin; C010857:apomyoglobin