title: A pilot study comparing protein expression in different segments of the normal colon and rectum and in normal colon versus adenoma in patients with Lynch syndrome.
abstract: OBJECTIVE
  Lynch syndrome (LS) is a common inherited predisposition to colorectal cancer (CRC). In LS patients, CRC is predominantly located in the right colon, as opposed to sporadic CRC, which usually affects the left colon or rectum. Previous studies have demonstrated a clear distinction in gene expression between sporadic CRC and normal colon at different locations in the colorectum. However, little is known about LS gene expression profiles in different areas of the colorectum. Here, we compared the protein expression profiles for normal colorectal samples among different locations as well as between adenomas and matched normal tissue in LS.
  
  
  METHODS
  Protein from 33 tissue samples (27 normal tissues and 6 adenomas) from 9 patients with LS was extracted for reverse-phase protein array (RPPA) analysis. The antibody panel used for RPPA included 109 key proteins involved in various cancer-related pathways. Cluster 3.0 was used for unsupervised and supervised clustering analysis.
  
  
  RESULTS
  IGF1R and COL6A1 were expressed significantly differently between the normal right and normal left colon (q < 0.05); FN1, COL6A1, and IGF1R were expressed significantly differently between the normal right colon and normal rectum (q < 0.05). In the adenomas and matched normal tissue, PEA-15 was the only protein with significantly different expression (q < 0.05).
  
  
  CONCLUSIONS
  We found differences in protein expression between normal tissues from the right colon, left colon, and rectum as well as between adenomas and matched normal tissue. However, those differences should be further confirmed in a larger sample size.
authors.affiliation: Department of Epidemiology, The University of Texas MD Anderson Cancer Center, 1155 Pressler St, Houston, TX 77030, USA. cwei@mdanderson.org
authors.forename: Chongjuan
authors.initials: C
authors.lastname: Wei
authors.forename: Jinyun
authors.initials: J
authors.lastname: Chen
authors.forename: Mala
authors.initials: M
authors.lastname: Pande
authors.forename: Patrick M
authors.initials: PM
authors.lastname: Lynch
authors.forename: Marsha L
authors.initials: ML
authors.lastname: Frazier
mesh_terms: D000236:Adenoma / Q000378:metabolism* / Q000473:pathology; D056148:Chromatography, Reverse-Phase; D003106:Colon / Q000378:metabolism*; D003123:Colorectal Neoplasms, Hereditary Nonpolyposis / Q000378:metabolism* / Q000473:pathology; D005260:Female; D006801:Humans; D008297:Male; D053858:Metabolic Networks and Pathways; D010865:Pilot Projects; D020543:Proteome / Q000302:isolation & purification / Q000378:metabolism*; D012007:Rectum / Q000378:metabolism*; D046888:Tissue Array Analysis
chemical_list: D020543:Proteome