title: Photoelectron spectra of some important biological molecules: symmetry-adapted-cluster configuration interaction study.
abstract: In this work, the valence vertical ionization energies (up to 5) of some important biologically active molecules including 2,4-dinitrophenol, 2,4-dinitroanisole, nicotinic acid, nicotinic acid methyl ester, nicotinamide, N,N-diethylnicotinamide, barbituric acid, uric acid, cytosine, β-carotene, and menadione were calculated in the gas phase and compared with the experimental data reported in the literature. The symmetry-adapted-cluster configuration interaction (SAC-CI) general-R method was used to calculate the ionization energies. The intensity of each ionization band was evaluated using the monopole approximation. Comparison of the calculated photoelectron spectrum of each molecule with its corresponding experimental spectra allowed for assigning the photoelectron bands by natural bonding orbital (NBO) calculations even though some of the associated bands were significantly overlapped for some molecules. Among the considered molecules, there was no agreement between the experimental and calculated photoelectron spectrum of β-carotene. The reason for this disagreement was theoretically investigated and attributed to the degradation and decomposition of β-carotene. The calculated first ionization energies of the considered molecules were correlated with their Hückel k-index to obtain Coulomb (α) and resonance (β) integrals of the Hückel molecular orbital theory for the biomolecules considered in this study. A linear correlation was found between the first ionization energy and the Hückel k-index.
authors: Chemistry Department, Isfahan University of Technology, Isfahan, 84156-83111, Iran. farrokhphossein@gmail.com
authors: Hossein
authors: H
authors: Farrokhpour
authors: Maryam
authors: M
authors: Ghandehari
mesh_terms: D019297:2,4-Dinitrophenol / Q000737:chemistry; D000840:Anisoles / Q000737:chemistry; D001463:Barbiturates / Q000737:chemistry; D003596:Cytosine / Q000737:chemistry; D005740:Gases / Q000737:chemistry; D008958:Models, Molecular; D008968:Molecular Conformation; D009525:Niacin / Q000737:chemistry; D009536:Niacinamide / Q000737:chemistry; D009930:Organic Chemicals / Q000737:chemistry*; D056951:Photoelectron Spectroscopy; D014527:Uric Acid / Q000737:chemistry; D019207:beta Carotene / Q000737:chemistry
chemical_list: D000840:Anisoles; D001463:Barbiturates; D005740:Gases; D009930:Organic Chemicals; D019207:beta Carotene; C539360:2,4-dinitroanisole; D009536:Niacinamide; D009525:Niacin; D014527:Uric Acid; D003596:Cytosine; D019297:2,4-Dinitrophenol; C032232:barbituric acid