title: STRAW: Species TRee Analysis Web server.
abstract: The coalescent methods for species tree reconstruction are increasingly popular because they can accommodate coalescence and multilocus data sets. Herein, we present STRAW, a web server that offers workflows for reconstruction of phylogenies of species using three species tree methods-MP-EST, STAR and NJst. The input data are a collection of rooted gene trees (for STAR and MP-EST methods) or unrooted gene trees (for NJst). The output includes the estimated species tree, modified Robinson-Foulds distances between gene trees and the estimated species tree and visualization of trees to compare gene trees with the estimated species tree. The web sever is available at http://bioinformatics.publichealth.uga.edu/SpeciesTreeAnalysis/.
authors: Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
authors: Timothy I
authors: TI
authors: Shaw
authors: Zheng
authors: Z
authors: Ruan
authors: Travis C
authors: TC
authors: Glenn
authors: Liang
authors: L
authors: Liu
mesh_terms: D000465:Algorithms; D020407:Internet; D010802:Phylogeny; D012984:Software
references: Nature. 2008 Apr 10;452(7188):745-9
references: 18322464
references: Evolution. 2009 Jan;63(1):1-19
references: 19146594
references: Mol Phylogenet Evol. 2009 Oct;53(1):320-8
references: 19501178
references: BMC Evol Biol. 2010 Oct 11;10:302
references: 20937096
references: Syst Biol. 2009 Oct;58(5):468-77
references: 20525601
references: Bioinformatics. 2008 Nov 1;24(21):2542-3
references: 18799483
references: Syst Biol. 2003 Oct;52(5):696-704
references: 14530136
references: Bioinformatics. 2005 Feb 15;21(4):456-63
references: 15608047
references: Syst Biol. 2011 Oct;60(5):661-7
references: 21447481
references: Mol Biol Evol. 2010 Mar;27(3):570-80
references: 19906793
references: Bioinformatics. 2004 Jan 22;20(2):289-90
references: 14734327
references: PLoS One. 2010 Aug 18;5(8):e12267
references: 20805892
references: Mol Biol Evol. 2008 May;25(5):960-71
references: 18281270
references: BMC Bioinformatics. 2012 Aug 21;13:209
references: 22909249
references: Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14942-7
references: 22930817
references: Bioinformatics. 2009 Apr 1;25(7):971-3
references: 19211573
references: Mol Biol Evol. 1987 Jul;4(4):406-25
references: 3447015
references: PLoS One. 2012;7(11):e48472
references: 23166587
references: IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):166-71
references: 20150678
references: Genetics. 2003 Aug;164(4):1645-56
references: 12930768