title: An E. coli cell-free expression toolbox: application to synthetic gene circuits and artificial cells.
abstract: Cell-free protein synthesis is becoming a powerful technique to construct and to study complex informational processes in vitro. Engineering synthetic gene circuits in a test tube, however, is seriously limited by the transcription repertoire of modern cell-free systems, composed of only a few bacteriophage regulatory elements. Here, we report the construction and the phenomenological characterization of synthetic gene circuits engineered with a cell-free expression toolbox that works with the seven E. coli sigma factors. The E. coli endogenous holoenzyme E(70) is used as the primary transcription machinery. Elementary circuit motifs, such as multiple stage cascades, AND gate and negative feedback loops are constructed with the six other sigma factors, two bacteriophage RNA polymerases, and a set of repressors. The circuit dynamics reveal the importance of the global mRNA turnover rate and of passive competition-induced transcriptional regulation. Cell-free reactions can be carried out over long periods of time with a small-scale dialysis reactor or in phospholipid vesicles, an artificial cell system. This toolbox is a unique platform to study complex transcription/translation-based biochemical systems in vitro.
authors: School of Physics and Astronomy, University of Minnesota, 116 Church Street SE, Minneapolis, MN 55455, USA.
authors: Jonghyeon
authors: J
authors: Shin
authors: Vincent
authors: V
authors: Noireaux
mesh_terms: D058045:Artificial Cells; D004926:Escherichia coli / Q000235:genetics* / Q000378:metabolism; D029968:Escherichia coli Proteins / Q000235:genetics; D053263:Gene Regulatory Networks; D005813:Genes, Synthetic; D005818:Genetic Engineering; D012808:Sigma Factor / Q000235:genetics; D058615:Synthetic Biology; D015533:Transcriptional Activation
chemical_list: D029968:Escherichia coli Proteins; D012808:Sigma Factor