title: Computational identification and analysis of arsenate reductase protein in Cronobacter sakazakii ATCC BAA-894 suggests potential microorganism for reducing arsenate.
abstract: This study focuses a bioinformatics-based prediction of arsC gene product arsenate reductase (ArsC) protein in Cronobacter sakazakii BAA-894 strain. A protein structure-based study encloses three-dimensional structural modeling of target ArsC protein, was carried out by homology modeling method. Ultimately, the detection of active binding regions was carried out for characterization of functional sites in protein. The ten probable ligand binding sites were predicted for target protein structure and highlighted the common binding residues between target and template protein. It has been first time identified that modeled ArsC protein structure in C. sakazakii was structurally and functionally similar to well-characterized ArsC protein of Escherichia coli because of having same structural motifs and fold with similar protein topology and function. Investigation revealed that ArsC from C. sakazakii can play significant role during arsenic resistance and potential microorganism for bioremediation of arsenic toxicity.
authors.affiliation: Center of Bioinformatics, IIDS, University of Allahabad, Nehru Science Complex, Allahabad, 211002, India. bioinfonavneet@gmail.com
authors.forename: Navaneet
authors.initials: N
authors.lastname: Chaturvedi
authors.forename: Vinay Kumar
authors.initials: VK
authors.lastname: Singh
authors.forename: Paras Nath
authors.initials: PN
authors.lastname: Pandey
mesh_terms: D053502:Arsenate Reductases / Q000737:chemistry* / Q000378:metabolism; D001152:Arsenicals / Q000378:metabolism; D001426:Bacterial Proteins / Q000737:chemistry* / Q000378:metabolism; D001665:Binding Sites; D019295:Computational Biology; D044083:Cronobacter sakazakii / Q000145:classification / Q000201:enzymology* / Q000378:metabolism; D004926:Escherichia coli / Q000378:metabolism; D008024:Ligands; D008958:Models, Molecular; D010084:Oxidation-Reduction; D011487:Protein Conformation; D017434:Protein Structure, Tertiary; D013329:Structure-Activity Relationship
chemical_list: D001152:Arsenicals; D001426:Bacterial Proteins; D008024:Ligands; D053502:Arsenate Reductases