title: Effects of the infectious period distribution on predicted transitions in childhood disease dynamics.
abstract: The population dynamics of infectious diseases occasionally undergo rapid qualitative changes, such as transitions from annual to biennial cycles or to irregular dynamics. Previous work, based on the standard seasonally forced 'susceptible-exposed-infectious-removed' (SEIR) model has found that transitions in the dynamics of many childhood diseases result from bifurcations induced by slow changes in birth and vaccination rates. However, the standard SEIR formulation assumes that the stage durations (latent and infectious periods) are exponentially distributed, whereas real distributions are narrower and centred around the mean. Much recent work has indicated that realistically distributed stage durations strongly affect the dynamical structure of seasonally forced epidemic models. We investigate whether inferences drawn from previous analyses of transitions in patterns of measles dynamics are robust to the shapes of the stage duration distributions. As an illustrative example, we analyse measles dynamics in New York City from 1928 to 1972. We find that with a fixed mean infectious period in the susceptible-infectious-removed (SIR) model, the dynamical structure and predicted transitions vary substantially as a function of the shape of the infectious period distribution. By contrast, with fixed mean latent and infectious periods in the SEIR model, the shapes of the stage duration distributions have a less dramatic effect on model dynamical structure and predicted transitions. All these results can be understood more easily by considering the distribution of the disease generation time as opposed to the distributions of individual disease stages. Numerical bifurcation analysis reveals that for a given mean generation time the dynamics of the SIR and SEIR models for measles are nearly equivalent and are insensitive to the shapes of the disease stage distributions.
authors.affiliation: Department of Mathematics and Statistics, McMaster University, Hamilton, Ontario, Canada.
authors.forename: Olga
authors.initials: O
authors.lastname: Krylova
authors.forename: David J D
authors.initials: DJ
authors.lastname: Earn
mesh_terms: D002648:Child; D006801:Humans; D015994:Incidence; D008457:Measles / Q000453:epidemiology*; D008962:Models, Theoretical; D009519:New York City / Q000453:epidemiology; D011157:Population Dynamics; D012621:Seasons; D013997:Time Factors
keywords: SIR epidemic model; bifurcation theory; generation time; measles in New York City; seasonal forcing; waiting time distribution