title: RNAi silencing of a cytochrome P450 monoxygenase disrupts the ability of a filamentous fungus, Graphium sp., to grow on short-chain gaseous alkanes and ethers.
abstract: Graphium sp. (ATCC 58400), a filamentous fungus, is one of the few eukaryotes that grows on short-chain alkanes and ethers. In this study, we investigated the genetic underpinnings that enable this fungus to catalyze the first step in the alkane and ether oxidation pathway. A gene, CYP52L1, was identified, cloned and functionally characterized as an alkane-oxidizing cytochrome P450 (GSPALK1). Analysis of CYP52L1 suggests that it is a member of the CYP52 cytochrome P450 family, which is comprised of medium- and long-chain alkane-oxidizing enzymes found in yeasts. However, phylogenetic analysis of GSPALK1 with other CYP52 members suggests they are not closely related. Post-transcriptional ds-RNA-mediated gene silencing of CYP52L1 severely reduced the ability of this fungus to oxidize alkanes and ethers, however, downstream metabolic steps in these pathways were unaffected. Collectively, the results of this study suggest that GSPALK1 is the enzyme that catalyzes the initial oxidation of alkanes and ethers but is not involved in the later steps of alkane or ether metabolism.
authors.affiliation: Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR, 97331-2902, USA.
authors.forename: Kristin M
authors.initials: KM
authors.lastname: Trippe
authors.forename: Thomas J
authors.initials: TJ
authors.lastname: Wolpert
authors.forename: Michael R
authors.initials: MR
authors.lastname: Hyman
authors.forename: Lynda M
authors.initials: LM
authors.lastname: Ciuffetti
mesh_terms: D000473:Alkanes / Q000378:metabolism*; D001673:Biodegradation, Environmental; D065607:Cytochrome P-450 Enzyme Inhibitors; D003577:Cytochrome P-450 Enzyme System / Q000145:classification / Q000235:genetics* / Q000378:metabolism; D004785:Environmental Pollutants / Q000378:metabolism*; D004987:Ethers / Q000378:metabolism*; D005740:Gases; D015870:Gene Expression; D007527:Isoenzymes / Q000037:antagonists & inhibitors / Q000145:classification / Q000235:genetics / Q000378:metabolism; D010084:Oxidation-Reduction; D010802:Phylogeny; D034741:RNA, Small Interfering / Q000235:genetics / Q000378:metabolism; D004718:Saccharomycetales / Q000201:enzymology* / Q000235:genetics; D017422:Sequence Analysis, DNA
chemical_list: D000473:Alkanes; D065607:Cytochrome P-450 Enzyme Inhibitors; D004785:Environmental Pollutants; D004987:Ethers; D005740:Gases; D007527:Isoenzymes; D034741:RNA, Small Interfering; D003577:Cytochrome P-450 Enzyme System