title: Early signatures of regime shifts in gene expression dynamics.
abstract: Recently, a large number of studies have been carried out on the early signatures of sudden regime shifts in systems as diverse as ecosystems, financial markets, population biology and complex diseases. The signatures of regime shifts in gene expression dynamics are less systematically investigated. In this paper, we consider sudden regime shifts in the gene expression dynamics described by a fold-bifurcation model involving bistability and hysteresis. We consider two alternative models, models 1 and 2, of competence development in the bacterial population B. subtilis and determine some early signatures of the regime shifts between competence and noncompetence. We use both deterministic and stochastic formalisms for the purpose of our study. The early signatures studied include the critical slowing down as a transition point is approached, rising variance and the lag-1 autocorrelation function, skewness and a ratio of two mean first passage times. Some of the signatures could provide the experimental basis for distinguishing between bistability and excitability as the correct mechanism for the development of competence.
authors.affiliation: Department of Physics, Bose Institute, 93/1 Acharya Prafulla Chandra Road, Kolkata-700009, India. mainakpl@bosemain.boseinst.ac.in
authors.forename: Mainak
authors.initials: M
authors.lastname: Pal
authors.forename: Amit Kumar
authors.initials: AK
authors.lastname: Pal
authors.forename: Sayantari
authors.initials: S
authors.lastname: Ghosh
authors.forename: Indrani
authors.initials: I
authors.lastname: Bose
mesh_terms: D001412:Bacillus subtilis / Q000235:genetics*; D015964:Gene Expression Regulation, Bacterial; D053263:Gene Regulatory Networks; D008957:Models, Genetic; D013598:Systems Theory