title: Relaxing the closure assumption in occupancy models: staggered arrival and departure times.
abstract: Occupancy statistical models that account for imperfect detection have proved very useful in several areas of ecology, including species distribution and spatial dynamics, disease ecology, and ecological responses to climate change. These models are based on the collection of multiple samples at each of a number of sites within a given season, during which it is assumed the species is either absent or present and available for detection while each sample is taken. However, for some species, individuals are only present or available for detection seasonally. We present a statistical model that relaxes the closure assumption within a season by permitting staggered entry and exit times for the species of interest at each site. Based on simulation, our open model eliminates bias in occupancy estimators and in some cases increases precision. The power to detect the violation of closure is high if detection probability is reasonably high. In addition to providing more robust estimation of occupancy, this model permits comparison of phenology across sites, species, or years, by modeling variation in arrival or departure probabilities. In a comparison of four species of amphibians in Maryland we found that two toad species arrived at breeding sites later in the season than a salamander and frog species, and departed from sites earlier.
authors.affiliation: U.S. Geological Survey, Colorado Cooperative Fish and Wildlife Research Unit, Colorado State University, Fort Collins, Colorado 80523, USA. wkendall@usgs.gov
authors.forename: William L
authors.initials: WL
authors.lastname: Kendall
authors.forename: James E
authors.initials: JE
authors.lastname: Hines
authors.forename: James D
authors.initials: JD
authors.lastname: Nichols
authors.forename: Evan H Campbell
authors.initials: EH
authors.lastname: Grant
mesh_terms: D000818:Animals; D001001:Anura / Q000145:classification / Q000502:physiology*; D057231:Climate Change; D008954:Models, Biological; D015233:Models, Statistical; D011157:Population Dynamics; D012098:Reproduction; D012621:Seasons; D013045:Species Specificity; D014562:Caudata / Q000502:physiology*