title: Genetic diversity analysis of cyanogenic potential (CNp) of root among improved genotypes of cassava using simple sequence repeat markers.
abstract: Cyanogenic potential (CNp) of cassava constitutes a serious problem for over 500 million people who rely on the crop as their main source of calories. Genetic diversity is a key to successful crop improvement for breeding new improved variability for target traits. Forty-three improved genotypes of cassava developed by International Institute of Tropical Agriculture (ITA), Ibadan, were characterized for CNp trait using 35 Simple Sequence.Repeat (SSR) markers. Essential colorimetry picric test was used for evaluation of CNp on a color scale of 1 to 14. The CNp scores obtained ranged from 3 to 9, with a mean score of 5.48 (+/- 0.09) based on Statistical Analysis System (SAS) package. TMS M98/ 0068 (4.0 +/- 0.25) was identified as the best genotype with low CNp while TMS M98/0028 (7.75 +/- 0.25) was the worst. The 43 genotypes were assigned into 7 phenotypic groups based on rank-sum analysis in SAS. Dissimilarity analysis representatives for windows generated a phylogenetic tree with 5 clusters which represented hybridizing groups. Each of the clusters (except 4) contained low CNp genotypes that could be used for improving the high CNp genotypes in the same or near cluster. The scatter plot of the genotypes showed that there was little or no demarcation for phenotypic CNp groupings in the molecular groupings. The result of this study demonstrated that SSR markers are powerful tools for the assessment of genetic variability, and proper identification and selection of parents for genetic improvement of low CNp trait among the IITA cassava collection.
authors.affiliation: Cassava Breeding Unit, International Institute of Tropical Agriculture IITA), Department of Biochemistry, University of lbadan, Ibadan, Nigeria. kmoyib@hotmail.com
authors.forename: O K
authors.initials: OK
authors.lastname: Moyib
authors.forename: J
authors.initials: J
authors.lastname: Mkumbira
authors.forename: O A
authors.initials: OA
authors.lastname: Odunola
authors.forename: A G
authors.initials: AG
authors.lastname: Dixon
mesh_terms: D015415:Biomarkers; D030841:Food, Genetically Modified; D014644:Genetic Variation; D018745:Genome, Plant; D006027:Glycosides / Q000235:genetics / Q000378:metabolism; D006801:Humans; D006824:Hybridization, Genetic; D006856:Hydrogen Cyanide / Q000378:metabolism* / Q000633:toxicity; D002365:Manihot / Q000235:genetics*; D018895:Microsatellite Repeats; D010939:Plant Poisoning / Q000517:prevention & control; D018517:Plant Roots / Q000235:genetics; D030821:Plants, Genetically Modified / Q000145:classification / Q000378:metabolism; D043922:Toxicogenetics; D014675:Vegetables / Q000235:genetics
chemical_list: D015415:Biomarkers; D006027:Glycosides; C007173:cyanogenic glycosides; D006856:Hydrogen Cyanide