title: Visual detection of Potato Leafroll virus by loop-mediated isothermal amplification of DNA with the GeneFinder™ dye.
abstract: The most common virus affecting potatoes in the field worldwide is Potato Leafroll virus (PLRV), belonging to the family Luteoviridae, genius Plerovirus. There are several molecular methods to detect PLRV including polymerase chain reaction (PCR), Multiplex AmpliDet RNA and double antibody sandwich ELISA (DAS-ELISA). But these techniques take a long time for 3h to two days, requiring sophisticated tools. The aim of this study was to reduce the time required to detect PLRV, using a newly designed loop-mediated isothermal amplification (LAMP) technique requiring only an ordinary water bath or thermoblock. PLRV RNA was extracted from overall 80 infected naturally potato leaves. A set of six novel primers for the LAMP reaction was designed according to the highly conserved sequence of the viral coat protein (CP) gene. LAMP was carried out under isothermal conditions, applying the Bst DNA polymerase enzyme; the LAMP products were detected visually using the GeneFinder™ florescence dye. A positive result using the GeneFinder™ dye was a color change from the original orange to green. Results confirmed LAMP with GeneFinder™ provides a rapid and safe assay for detection of PLRV. Since with other molecular methods, equipping laboratories with a thermocycler or expensive detector systems is unavoidable, this assay was found to be a simple, cost-effective molecular method that has the potential to replace other diagnostic methods in primary laboratories without the need for expensive equipment or specialized techniques. It can also be considered as a reliable alternative viral detection system in further investigations.
authors.affiliation: Department of Agriculture and Plant Breeding, Faculty of Agriculture, Zanjan University, Zanjan, Iran.
authors.forename: Mohammad Amin
authors.initials: MA
authors.lastname: Almasi
authors.forename: Maryam
authors.initials: M
authors.lastname: Erfan Manesh
authors.forename: Hossein
authors.initials: H
authors.lastname: Jafary
authors.forename: Seyed Mohammad Hosseini
authors.initials: SM
authors.lastname: Dehabadi
mesh_terms: D017931:DNA Primers / Q000235:genetics; D052679:Luteoviridae / Q000235:genetics / Q000302:isolation & purification*; D021141:Nucleic Acid Amplification Techniques / Q000379:methods*; D010935:Plant Diseases / Q000821:virology*; D018515:Plant Leaves / Q000821:virology; D011198:Solanum tuberosum / Q000821:virology*; D013194:Staining and Labeling / Q000379:methods*; D014773:Virology / Q000379:methods*
chemical_list: D017931:DNA Primers