title: Complete sequence of pOZ176, a 500-kilobase IncP-2 plasmid encoding IMP-9-mediated carbapenem resistance, from outbreak isolate Pseudomonas aeruginosa 96.
abstract: Pseudomonas aeruginosa 96 (PA96) was isolated during a multicenter surveillance study in Guangzhou, China, in 2000. Whole-genome sequencing of this outbreak strain facilitated analysis of its IncP-2 carbapenem-resistant plasmid, pOZ176. The plasmid had a length of 500,839 bp and an average percent G+C content of 57%. Of the 618 predicted open reading frames, 65% encode hypothetical proteins. The pOZ176 backbone is not closely related to any plasmids thus far sequenced, but some similarity to pQBR103 of Pseudomonas fluorescens SBW25 was observed. Two multiresistant class 1 integrons and several insertion sequences were identified. The blaIMP-9-carrying integron contained aacA4 → bla(IMP-9) → aacA4, flanked upstream by Tn21 tnpMRA and downstream by a complete tni operon of Tn402 and a mer module, named Tn6016. The second integron carried aacA4 → catB8a → bla(OXA-10) and was flanked by Tn1403-like tnpRA and a sul1-type 3' conserved sequence (3'-CS), named Tn6217. Other features include three resistance genes similar to those of Tn5, a tellurite resistance operon, and two pil operons. The replication and maintenance systems exhibit similarity to a genomic island of Ralstonia solanacearum GM1000. Codon usage analysis suggests the recent acquisition of bla(IMP-9). The origins of the integrons on pOZ176 indicated separate horizontal gene transfer events driven by antibiotic selection. The novel mosaic structure of pOZ176 suggests that it is derived from environmental bacteria.
authors.affiliation: Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.
authors.forename: Jianhui
authors.initials: J
authors.lastname: Xiong
authors.forename: David C
authors.initials: DC
authors.lastname: Alexander
authors.forename: Jennifer H
authors.initials: JH
authors.lastname: Ma
authors.forename: Maxime
authors.initials: M
authors.lastname: Déraspe
authors.forename: Donald E
authors.initials: DE
authors.lastname: Low
authors.forename: Frances B
authors.initials: FB
authors.lastname: Jamieson
authors.forename: Paul H
authors.initials: PH
authors.lastname: Roy
mesh_terms: D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics; D001482:Base Composition; D001483:Base Sequence; D015780:Carbapenems / Q000494:pharmacology*; D004251:DNA Transposable Elements; D024901:Drug Resistance, Multiple, Bacterial; D019143:Evolution, Molecular; D016680:Genome, Bacterial; D044404:Genomic Islands; D006801:Humans; D008826:Microbial Sensitivity Tests; D005810:Multigene Family; D009876:Operon; D010957:Plasmids / Q000235:genetics*; D011552:Pseudomonas Infections / Q000382:microbiology; D011550:Pseudomonas aeruginosa / Q000145:classification / Q000187:drug effects / Q000235:genetics* / Q000302:isolation & purification; D013183:Sputum / Q000382:microbiology; D001618:beta-Lactamases / Q000737:chemistry / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins; D015780:Carbapenems; D004251:DNA Transposable Elements; C573059:beta lactamase IMP-29, Pseudomonas aeruginosa; D001618:beta-Lactamases