title: Transcriptome analysis of Barbarea vulgaris infested with diamondback moth (Plutella xylostella) larvae.
abstract: BACKGROUND
  The diamondback moth (DBM, Plutella xylostella) is a crucifer-specific pest that causes significant crop losses worldwide. Barbarea vulgaris (Brassicaceae) can resist DBM and other herbivorous insects by producing feeding-deterrent triterpenoid saponins. Plant breeders have long aimed to transfer this insect resistance to other crops. However, a lack of knowledge on the biosynthetic pathways and regulatory networks of these insecticidal saponins has hindered their practical application. A pyrosequencing-based transcriptome analysis of B. vulgaris during DBM larval feeding was performed to identify genes and gene networks responsible for saponin biosynthesis and its regulation at the genome level.
  
  
  RESULTS
  Approximately 1.22, 1.19, 1.16, 1.23, 1.16, 1.20, and 2.39 giga base pairs of clean nucleotides were generated from B. vulgaris transcriptomes sampled 1, 4, 8, 12, 24, and 48 h after onset of P. xylostella feeding and from non-inoculated controls, respectively. De novo assembly using all data of the seven transcriptomes generated 39,531 unigenes. A total of 37,780 (95.57%) unigenes were annotated, 14,399 of which were assigned to one or more gene ontology terms and 19,620 of which were assigned to 126 known pathways. Expression profiles revealed 2,016-4,685 up-regulated and 557-5188 down-regulated transcripts. Secondary metabolic pathways, such as those of terpenoids, glucosinolates, and phenylpropanoids, and its related regulators were elevated. Candidate genes for the triterpene saponin pathway were found in the transcriptome. Orthological analysis of the transcriptome with four other crucifer transcriptomes identified 592 B. vulgaris-specific gene families with a P-value cutoff of 1e(-5).
  
  
  CONCLUSIONS
  This study presents the first comprehensive transcriptome analysis of B. vulgaris subjected to a series of DBM feedings. The biosynthetic and regulatory pathways of triterpenoid saponins and other DBM deterrent metabolites in this plant were classified. The results of this study will provide useful data for future investigations on pest-resistance phytochemistry and plant breeding.
authors.affiliation: Institute of Vegetables and Flowers, China Academy of Agricultural Sciences, Beijing, China.
authors.forename: Xiaochun
authors.initials: X
authors.lastname: Wei
authors.forename: Xiaohui
authors.initials: X
authors.lastname: Zhang
authors.forename: Di
authors.initials: D
authors.lastname: Shen
authors.forename: Haiping
authors.initials: H
authors.lastname: Wang
authors.forename: Qingjun
authors.initials: Q
authors.lastname: Wu
authors.forename: Peng
authors.initials: P
authors.lastname: Lu
authors.forename: Yang
authors.initials: Y
authors.lastname: Qiu
authors.forename: Jiangping
authors.initials: J
authors.lastname: Song
authors.forename: Youjun
authors.initials: Y
authors.lastname: Zhang
authors.forename: Xixiang
authors.initials: X
authors.lastname: Li
mesh_terms: D000818:Animals; D031216:Barbarea / Q000235:genetics* / Q000469:parasitology*; D007814:Larva / Q000472:pathogenicity*; D009036:Moths / Q000472:pathogenicity*; D059467:Transcriptome / Q000235:genetics*