title: A new phylogeny of tetraodontiform fishes (Tetraodontiformes, Acanthomorpha) based on 22 loci.
abstract: Tetraodontiform fishes represent one of the most peculiar radiations of teleost fishes. In spite of this, we do not currently have a consensus on the phylogenetic relationships among the major tetraodontiform lineages, with different morphological and molecular datasets all supporting contrasting relationships. In this paper we present the results of the analysis of tetraodontiform interrelationships based on two mitochondrial and 20 nuclear loci for 40 species of tetraodontiforms (representing all of the 10 currently recognized families), as well as three outgroups. Bayesian and maximum likelihood analyses of the concatenated dataset (18,682 nucleotides) strongly support novel relationships among the major tetraodontiform lineages. Our results recover two large clades already found in mitogenomic analyses (although the position of triacanthids differ), while they strongly conflict with hypotheses of tetraodontiform relationships inferred by previous studies based on morphology, as well as studies of higher-level teleost relationships based on nuclear loci, which included multiple tetraodontiform lineages. A parsimony gene-tree, species-tree analysis recovers relationships that are mostly congruent with the analyses of the concatenated dataset, with the significant exception of the position of the pufferfishes+porcupine fishes clade. Our findings suggest that while the phylogenetic placement of some tetraodontiform lineages (triacanthids, molids) remains problematic even after sequencing 22 loci, an overall molecular consensus is beginning to emerge regarding the existence of several major clades. This new hypothesis will require a re-evaluation of the phylogenetic usefulness of several morphological features, such as the fusion of several jaw bones into a parrot-like beak, or the reduction and loss of some of the fins, which may have occurred independently more times than previously thought.
authors.affiliation: University of California Los Angeles, Department of Ecology and Evolutionary Biology, 610 Charles E. Young Drive South, Los Angeles, CA 90095, USA. francesco.santini@alumni.utoronto.ca
authors.forename: Francesco
authors.initials: F
authors.lastname: Santini
authors.forename: Laurie
authors.initials: L
authors.lastname: Sorenson
authors.forename: Michael E
authors.initials: ME
authors.lastname: Alfaro
mesh_terms: D063147:Animal Distribution; D000818:Animals; D001499:Bayes Theorem; D044822:Biodiversity; D002467:Cell Nucleus / Q000235:genetics*; D004272:DNA, Mitochondrial / Q000145:classification* / Q000235:genetics; D049810:Genetic Speciation; D007568:Jaw / Q000033:anatomy & histology; D008957:Models, Genetic; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D023721:Tetraodontiformes / Q000033:anatomy & histology / Q000145:classification* / Q000235:genetics; D013997:Time Factors
chemical_list: D004272:DNA, Mitochondrial
keywords: Coral reefs; Morphology; Phylogenomics; Pufferfishes; Tetraodontiformes