title: Indexing molecules for their hERG liability.
abstract: The human Ether-a-go-go-Related-Gene (hERG) potassium (K(+)) channel is liable to drug-inducing blockage that prolongs the QT interval of the cardiac action potential, triggers arrhythmia and possibly causes sudden cardiac death. Early prediction of drug liability to hERG K(+) channel is therefore highly important and preferably obligatory at earlier stages of any drug discovery process. In vitro assessment of drug binding affinity to hERG K(+) channel involves substantial expenses, time, and labor; and therefore computational models for predicting liabilities of drug candidates for hERG toxicity is of much importance. In the present study, we apply the Iterative Stochastic Elimination (ISE) algorithm to construct a large number of rule-based models (filters) and exploit their combination for developing the concept of hERG Toxicity Index (ETI). ETI estimates the molecular risk to be a blocker of hERG potassium channel. The area under the curve (AUC) of the attained model is 0.94. The averaged ETI of hERG binders, drugs from CMC, clinical-MDDR, endogenous molecules, ACD and ZINC, were found to be 9.17, 2.53, 3.3, -1.98, -2.49 and -3.86 respectively. Applying the proposed hERG Toxicity Index Model on external test set composed of more than 1300 hERG blockers picked from chEMBL shows excellent performance (Matthews Correlation Coefficient of 0.89). The proposed strategy could be implemented for the evaluation of chemicals in the hit/lead optimization stages of the drug discovery process, improve the selection of drug candidates as well as the development of safe pharmaceutical products.
authors.affiliation: Drug Discovery Informatics Lab, QRC-Qasemi Research Center, Israel. a_rayan@qsm.ac.il
authors.forename: Anwar
authors.initials: A
authors.lastname: Rayan
authors.forename: Mizied
authors.initials: M
authors.lastname: Falah
authors.forename: Jamal
authors.initials: J
authors.lastname: Raiyn
authors.forename: Beny
authors.initials: B
authors.lastname: Da'adoosh
authors.forename: Sleman
authors.initials: S
authors.lastname: Kadan
authors.forename: Hilal
authors.initials: H
authors.lastname: Zaid
authors.forename: Amiram
authors.initials: A
authors.lastname: Goldblum
mesh_terms: D051638:Ether-A-Go-Go Potassium Channels / Q000037:antagonists & inhibitors*; D006801:Humans; D015394:Molecular Structure; D026902:Potassium Channel Blockers / Q000737:chemistry / Q000494:pharmacology*; D013329:Structure-Activity Relationship
chemical_list: D051638:Ether-A-Go-Go Potassium Channels; D026902:Potassium Channel Blockers
keywords: ACD; CMC; Cardio-toxicity; Computational chemistry; EF; ETI; HTS; ISE; Iterative Stochastic Elimination; Iterative Stochastic Elimination (ISE); MCC; MDDR; MDL drug data report; Matthews' Correlation Coefficient; Structure activity relations; available chemicals directory; comprehensive medicinal chemistry database; enrichment factor; hERG; hERG Toxicity Index; high-throughput screening; human ether-a-go-go-related gene