title: Age-related differences revealed in Australian fur seal Arctocephalus pusillus doriferus gut microbiota.
abstract: The gut microbiota of Australian fur seals (Arctocephalus pusillus doriferus) was examined at different age classes using fluorescent in situ hybridisation (FISH) and 16S rRNA gene pyrosequencing. The FISH results indicated that in the fur seal groups, the predominant phyla are Firmicutes (22.14-67.33%) followed by Bacteroidetes (3.11-15.45%) and then Actinobacteria (1.4-5.9%) consistent with other mammals. Phylum Proteobacteria had an initial abundance of 1.8% in the 2-month-old pups, but < 1% of bacterial numbers for the other fur seal age groups. Significant differences did occur in the abundance of Clostridia, Lactobacilli and Bifidobacteria between 2 months pups and 9 months pups and adult fur seals. Results from the 16S rRNA gene pyrosequencing supported the FISH data and identified significant differences in the composition of Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Verrucomicrobia and Fusobacteria at all ages. Class Clostridia in phylum Firmicutes dominates the microbiota of the 2 months and 9 months seal pups, whilst class Bacilli dominates the 6 months pups. In addition, a high level of dissimilarity was observed between all age classes. This study provides novel insight into the gut microbiota of Australian fur seals at different age classes.
authors.affiliation: School of Exercise and Nutrition Sciences, Deakin University, Burwood, Vic., Australia; Molecular and Medical Research, Deakin University, Burwood, Vic., Australia.
authors.forename: Stuart C
authors.initials: SC
authors.lastname: Smith
authors.forename: Andrea
authors.initials: A
authors.lastname: Chalker
authors.forename: Meagan L
authors.initials: ML
authors.lastname: Dewar
authors.forename: John P Y
authors.initials: JP
authors.lastname: Arnould
mesh_terms: D000367:Age Factors; D000818:Animals; D001315:Australia; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D046069:Fur Seals / Q000235:genetics / Q000254:growth & development / Q000382:microbiology*; D041981:Gastrointestinal Tract / Q000382:microbiology*; D064307:Microbiota; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D012336:RNA, Ribosomal, 16S
keywords: 16S rRNA gene pyrosequencing; fluorescent in situ hybridisation; gastrointestinal tract bacteria; seals