title: In silico design and construction of metal-binding hybrid proteins for specific removal of cadmium based on CS3 pili display on the surface of Escherichia coli.
abstract: In this study, through a combination of bioinformatics and genetic engineering procedures, high-affinity metal-binding peptides were designed and expressed on the surface of Escherichia coli for selective Cd(2+) adsorption. Putative cadmium-binding motifs were identified by searches against the Prosite database and permissive sites in the major subunit (CstH) of the enterotoxigenic E. coli pili were predicted based on the data derived from modeling of 3D structures, secondary structure prediction and assignment, inspection of protein hydropathy and exposed regions, and also protein interaction sites. The metal-binding motifs were inserted into one permissive site of the CstH (amino acid 38) with the aid of the SOEing PCR technique. The capacity and selectivity of the recombinant bacteria displaying hybrid pili to adsorb cadmium were evaluated with the atomic absorption procedure. The levels of Cd(2+) accumulation in the recombinant E. coli strains were 13.9- and 11.33-fold higher than those in the control strain. Cd(2+) was selectively absorbed from a solution containing equal concentrations of four metals, resulting in more than 90% of the total adsorbed metals being Cd(2+) , showing a relatively high affinity for Cd(2+) over other coexisting metal ions.
authors.affiliation: National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran; Department of Biology, Faculty of Science, Zanjan University, Zanjan, Iran.
authors.forename: Vajiheh
authors.initials: V
authors.lastname: Eskandari
authors.forename: Bagher
authors.initials: B
authors.lastname: Yakhchali
authors.forename: Mehdi
authors.initials: M
authors.lastname: Sadeghi
authors.forename: Ali Asghar
authors.initials: AA
authors.lastname: Karkhane
mesh_terms: D000327:Adsorption; D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D001673:Biodegradation, Environmental; D002104:Cadmium / Q000737:chemistry / Q000302:isolation & purification* / Q000378:metabolism; D019295:Computational Biology; D003198:Computer Simulation; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism*; D010861:Fimbriae, Bacterial / Q000235:genetics*; D005818:Genetic Engineering / Q000379:methods*; D008969:Molecular Sequence Data; D011994:Recombinant Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D013379:Substrate Specificity; D013499:Surface Properties; D014874:Water Pollutants, Chemical / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism
chemical_list: D011994:Recombinant Proteins; D014874:Water Pollutants, Chemical; D002104:Cadmium
keywords: heavy metal accumulation; metal-binding motif; surface display