title: Reflects the coat protein variability of apple mosaic virus host preference?
abstract: Apple mosaic virus (ApMV) is a widespread ssRNA virus which infects diverse species of Rosales. The phylogenetic analysis of complete capsid protein gene of the largest set of ApMV isolates discriminated two main clusters of isolates: one cluster correlates with Maloideae hosts and Trebouxia lichen algae hosts; a second with hop, Prunus, and other woody tree hosts. No correlation was found between clusters and geographic origin of virus isolates, and positive selection hypothesis in distinct hosts was not confirmed: in all virus populations, purifying selection had occurred. GGT→AAT substitution resulted in Gly→Asn change inside the zinc-finger motif in the capsid protein was revealed specific for discrimination of the clusters and we hypothesise that could influence the host preference.
authors.affiliation: Department of Crop Protection, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, 165 21, Prague 6, Czech Republic.
authors.forename: L
authors.initials: L
authors.lastname: Grimová
authors.forename: L
authors.initials: L
authors.lastname: Winkowska
authors.forename: P
authors.initials: P
authors.lastname: Ryšánek
authors.forename: P
authors.initials: P
authors.lastname: Svoboda
authors.forename: K
authors.initials: K
authors.lastname: Petrzik
mesh_terms: D000595:Amino Acid Sequence; D036022:Capsid Proteins / Q000235:genetics*; D014644:Genetic Variation; D058507:Host Specificity; D019179:Ilarvirus / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification / Q000502:physiology; D027845:Malus / Q000821:virology*; D008969:Molecular Sequence Data; D010802:Phylogeny; D010935:Plant Diseases / Q000821:virology*
chemical_list: D036022:Capsid Proteins