title: Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data.
abstract: CONCLUSIONS
  Pathway Processor 2.0 is a web application designed to analyze high-throughput datasets, including but not limited to microarray and next-generation sequencing, using a pathway centric logic. In addition to well-established methods such as the Fisher's test and impact analysis, Pathway Processor 2.0 offers innovative methods that convert gene expression into pathway expression, leading to the identification of differentially regulated pathways in a dataset of choice.
  
  
  METHODS
  Pathway Processor 2.0 is available as a web service at http://compbiotoolbox.fmach.it/pathwayProcessor/. Sample datasets to test the functionality can be used directly from the application.
  
  
  BACKGROUND
  duccio.cavalieri@fmach.it
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Translational Genomics Unit, Department of Oncology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via La Masa 19, 20159 Milano, Italy.
authors.forename: Luca
authors.initials: L
authors.lastname: Beltrame
authors.forename: Luca
authors.initials: L
authors.lastname: Bianco
authors.forename: Paolo
authors.initials: P
authors.lastname: Fontana
authors.forename: Duccio
authors.initials: D
authors.lastname: Cavalieri
mesh_terms: D000818:Animals; D059014:High-Throughput Nucleotide Sequencing; D006801:Humans; D020407:Internet; D051379:Mice; D020411:Oligonucleotide Array Sequence Analysis; D051381:Rats; D012984:Software; D059467:Transcriptome