title: Homology modeling, ligand docking and in silico mutagenesis of neurospora Hsp80 (90): insight into intrinsic ATPase activity.
abstract: The Hsp90 family of proteins is an important component of the cellular response to elevated temperatures, environmental or physiological stress and nuclear receptor signalling. The primary object of this work is the 80-kDa heat shock protein, a member of the Hsp90 family, from the model filamentous fungus Neurospora crassa, (henceforth referred to as Hsp80Nc). In contrast to more extensively characterized members of the same family, (e.g. Hsp82Sc of Saccharomyces cerevisiae) it exhibits a higher intrinsic ATPase activity and the ability to form hetero-oligomeric complexes with Hsp70 in the absence of co-chaperones or other ancillary factors. As unabridged experimentally derived structures of Hsp80Nc or Hsp82Sc are not available; we developed homology-based models for both of them. A structural analysis and comparison of these models was undertaken to better understand the nature of dimerization-induced changes in secondary structure and patterns of residue interaction. Our studies yielded some interesting and novel insights into the synergistic and mutually reinforcing nature of interactions between major domains of the two chains in their dimeric forms. We also evaluated the effect of residue substitutions in the 'lid' region of Hsp80Nc and Hsp82Sc on the calculated ligand-binding energy of ATP (and ADP) to their respective N-terminal domains. Our studies suggest that the higher intrinsic ATPase activity of Hsp80Nc may be attributable to differences in the residue sequences between the lid region of these two proteins.
authors.affiliation: Department of Biological Sciences, The University of Calgary, 2500 University Drive NW, Calgary, AB T2N 1N4, Canada.
authors.forename: Samir S
authors.initials: SS
authors.lastname: Roy
authors.forename: Robert W
authors.initials: RW
authors.lastname: Wheatley
authors.forename: Manju
authors.initials: M
authors.lastname: Kapoor
mesh_terms: D000251:Adenosine Triphosphatases / Q000737:chemistry / Q000378:metabolism; D000595:Amino Acid Sequence; D000818:Animals; D005656:Fungal Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D018841:HSP90 Heat-Shock Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D006801:Humans; D008024:Ligands; D062105:Molecular Docking Simulation; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D016296:Mutagenesis; D009491:Neurospora / Q000378:metabolism; D011485:Protein Binding; D011487:Protein Conformation; D054730:Protein Interaction Domains and Motifs; D055503:Protein Multimerization; D015203:Reproducibility of Results; D016415:Sequence Alignment
chemical_list: D005656:Fungal Proteins; D018841:HSP90 Heat-Shock Proteins; D008024:Ligands; D000251:Adenosine Triphosphatases
keywords: Homology modeling; Hsp90s; Ligand docking simulation; Neurospora crassa; Saccharomyces cerevisiae