title: Bioconvection in spatially extended domains.
abstract: We numerically explore gyrotactic bioconvection in large spatially extended domains of finite depth using parameter values from available experiments with the unicellular alga Chlamydomonas nivalis. We numerically integrate the three-dimensional, time-dependent continuum model of Pedley et al. [J. Fluid Mech. 195, 223 (1988)] using a high-order, parallel, spectral-element approach. We explore the long-time nonlinear patterns and dynamics found for layers with an aspect ratio of 10 over a range of Rayleigh numbers. Our results yield the pattern wavelength and pattern dynamics which we compare with available theory and experimental measurement. There is good agreement for the pattern wavelength at short times between numerics, experiment, and a linear stability analysis. At long times we find that the general sequence of patterns given by the nonlinear evolution of the governing equations correspond qualitatively to what has been described experimentally. However, at long times the patterns in numerics grow to larger wavelengths, in contrast to what is observed in experiment where the wavelength is found to decrease with time.
authors.affiliation: Department of Engineering Science and Mechanics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA.
authors.forename: A
authors.initials: A
authors.lastname: Karimi
authors.forename: M R
authors.initials: MR
authors.lastname: Paul
mesh_terms: D002465:Cell Movement / Q000502:physiology*; D002696:Chlamydomonas / Q000502:physiology*; D003198:Computer Simulation; D044085:Microfluidics / Q000379:methods*; D008954:Models, Biological