title: Novel Integrative Genomics Approach for Associating GWAS Information with Intrinsic Subtypes of Breast Cancer.
abstract: Genome-wide association studies (GWAS) have achieved great success in identifying common variants associated with increased risk of developing breast cancer. However, GWAS do not typically provide information about the broader context in which genetic variants operate in different subtypes of breast cancer. The objective of this study was to determine whether genes containing single nucleotide polymorphisms (SNPs, herein called genetic variants) are associated with different subtypes of breast cancer. Additionally, we sought to identify gene regulator networks and biological pathways enriched for these genetic variants. Using supervised analysis, we identified 201 genes that were significantly associated with the six intrinsic subtypes of breast cancer. The results demonstrate that integrative genomics analysis is a powerful approach for linking GWAS information to distinct disease states and provide insights about the broader context in which genetic variants operate in different subtypes of breast cancer.
authors.affiliation: Cancer Institute, University of Mississippi Medical Center, Jackson, MS. ; Department of Medicine, University of Mississippi Medical Center, Jackson, MS.
authors.forename: Chindo
authors.initials: C
authors.lastname: Hicks
authors.forename: Tejaswi
authors.initials: T
authors.lastname: Koganti
authors.forename: Alexandra S
authors.initials: AS
authors.lastname: Brown
authors.forename: Jesus
authors.initials: J
authors.lastname: Monico
authors.forename: Kandis
authors.initials: K
authors.lastname: Backus
authors.forename: Lucio
authors.initials: L
authors.lastname: Miele
keywords: GWAS subtypes breast cancer