title: Computational tissue volume reconstruction of a peripheral nerve using high-resolution light-microscopy and reconstruct.
abstract: The development of neural cuff-electrodes requires several in vivo studies and revisions of the electrode design before the electrode is completely adapted to its target nerve. It is therefore favorable to simulate many of the steps involved in this process to reduce costs and animal testing. As the restoration of motor function is one of the most interesting applications of cuff-electrodes, the position and trajectories of myelinated fibers in the simulated nerve are important. In this paper, we investigate a method for building a precise neuroanatomical model of myelinated fibers in a peripheral nerve based on images obtained using high-resolution light microscopy. This anatomical model describes the first aim of our "Virtual workbench" project to establish a method for creating realistic neural simulation models based on image datasets. The imaging, processing, segmentation and technical limitations are described, and the steps involved in the transition into a simulation model are presented. The results showed that the position and trajectories of the myelinated axons were traced and virtualized using our technique, and small nerves could be reliably modeled based on of light microscopy images using low-cost OpenSource software and standard hardware. The anatomical model will be released to the scientific community.
authors.affiliation: Department of Neurosurgery, University Medical Center Freiburg, Freiburg, Germany. mortimer.gierthmuehlen@uniklinik-freiburg.de
authors.forename: Mortimer
authors.initials: M
authors.lastname: Gierthmuehlen
authors.forename: Thomas M
authors.initials: TM
authors.lastname: Freiman
authors.forename: Kirsten
authors.initials: K
authors.lastname: Haastert-Talini
authors.forename: Alexandra
authors.initials: A
authors.lastname: Mueller
authors.forename: Jan
authors.initials: J
authors.lastname: Kaminsky
authors.forename: Thomas
authors.initials: T
authors.lastname: Stieglitz
authors.forename: Dennis T T
authors.initials: DT
authors.lastname: Plachta
mesh_terms: D000818:Animals; D001369:Axons / Q000648:ultrastructure; D005260:Female; D007091:Image Processing, Computer-Assisted; D008853:Microscopy / Q000379:methods; D008953:Models, Anatomic; D009445:Neuroanatomy; D009929:Organ Size; D010525:Peripheral Nerves / Q000033:anatomy & histology* / Q000166:cytology* / Q000648:ultrastructure; D051381:Rats; D012584:Sciatic Nerve / Q000166:cytology / Q000648:ultrastructure