title: On the stability of fractal globules.
abstract: The fractal globule, a self-similar compact polymer conformation where the chain is spatially segregated on all length scales, has been proposed to result from a sudden polymer collapse. This state has gained renewed interest as one of the prime candidates for the non-entangled states of DNA molecules inside cell nuclei. Here, we present Monte Carlo simulations of collapsing polymers. We find through studying polymers of lengths between 500 and 8000 that a chain collapses into a globule, which is neither fractal, nor as entangled as an equilibrium globule. To demonstrate that the non-fractalness of the conformation is not just the result of the collapse dynamics, we study in addition the dynamics of polymers that start from fractal globule configurations. Also in this case the chain moves quickly to the weakly entangled globule where the polymer is well mixed. After a much longer time the chain entangles reach its equilibrium conformation, the molten globule. We find that the fractal globule is a highly unstable conformation that only exists in the presence of extra constraints such as cross-links.
authors.affiliation: Instituut-Lorentz, Leiden University, P.O. Box 9506, 2300 RA Leiden, The Netherlands. schram@lorentz.leidenuniv.nl
authors.forename: Raoul D
authors.initials: RD
authors.lastname: Schram
authors.forename: Gerard T
authors.initials: GT
authors.lastname: Barkema
authors.forename: Helmut
authors.initials: H
authors.lastname: Schiessel
mesh_terms: D004247:DNA / Q000737:chemistry; D017709:Fractals; D008968:Molecular Conformation; D056004:Molecular Dynamics Simulation; D009010:Monte Carlo Method; D011108:Polymers / Q000737:chemistry*
chemical_list: D011108:Polymers; D004247:DNA