title: Protein identification in two phases of 1,3-propanediol production by proteomic analysis.
abstract: Proteomic analysis by two-dimensional electrophoresis (2D)-mass spectrometry was used to identify differentially expressed proteins in the Clostridium sp. native strain (IBUN 158B) in two phases of the 1,3-propanediol (1,3-PD) production (lag phase and exponential growth phase). Intracellular protein fraction extraction conditions were standardised, as well as the 2D electrophoresis. Differences were found between both of the growth phases evaluated here. Thirty-two of the differentially expressed proteins were chosen to be identified by tandem mass spectrometry (MALDI TOF/TOF). The presence of four enzymes implicated in the 1,3-PD metabolic pathway was recorded: one from the reductive route (1,3-propanediol dehydrogenase) and three from the oxidative route (3-hydroxybutyryl-CoA dehydrogenase, NADPH-dependent butanol dehydrogenase and phosphate butyryl transferase). The following enzymes which have not been previously reported for Clostridium sp., were also identified: phosphoglycerate kinase, glucose 6-phosphate isomerase, deoxyribose phosphate aldolase, transketolase, cysteine synthetase, O-acetylhomoserine sulphhydrylase, glycyl-tRNA ligase, aspartate-β-semialdehyde dehydrogenase, inosine-5-monophosphate dehydrogenase, aconitate hydratase and the PrsA protein. The foregoing provides a novel contribution towards knowledge of the native strain for the purpose of designing genetic manipulation strategies to obtain strains with high production of 1,3-PD.
  
  
  CONCLUSIONS
  The article "Protein identification in two phases of 1,3-propanediol production by proteomic analysis" provides a novel contribution towards knowledge regarding the Colombian Clostridium sp. native strain (IBUN 158B) because this is a new approximation in comparative proteomics in two phases of the bacterial growth and 1,3-propanediol (1,3-PD) production conditions. The proteomic studies are very important to identify the enzymes that are expressed at different stages of production and therefore genes of interest in the genetic manipulation strategies; the results can be taken into account in future studies in metabolic engineering when optimising 1,3-PD production, in a cost-effective process having direct industrial applications.
authors.affiliation: Bioprocesses and Bioprospecting Group, Biotechnology Institute, Universidad Nacional de Colombia, Bogotá, Colombia.
authors.forename: Natalia
authors.initials: N
authors.lastname: Comba González
authors.forename: Andres F
authors.initials: AF
authors.lastname: Vallejo
authors.forename: Myriam
authors.initials: M
authors.lastname: Sánchez-Gómez
authors.forename: Dolly
authors.initials: D
authors.lastname: Montoya
mesh_terms: D001426:Bacterial Proteins / Q000378:metabolism*; D046972:Clostridium butyricum / Q000201:enzymology*; D011409:Propylene Glycols / Q000378:metabolism*; D020543:Proteome / Q000378:metabolism*; D040901:Proteomics; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
chemical_list: D001426:Bacterial Proteins; D011409:Propylene Glycols; D020543:Proteome; C041787:1,3-propanediol
keywords: 1,3-Propanediol; Clostridium sp.; Mass spectrometry; Proteome; Two-dimensional electrophoresis