title: Theoretical and experimental analysis of the forced LacI-AraC oscillator with a minimal gene regulatory model.
abstract: Oscillatory dynamics have been observed in multiple cellular functions and synthetic constructs; and here, we study the behavior of a synthetic oscillator under temporal perturbations. We use a minimal model, involving a single transcription factor with delayed self-repression and enzymatic degradation, together with a first-order perturbative approach, to derive an analytical expression for the power spectrum of the system, which characterizes its response to external forces and molecular noise. Experimentally, we force and monitor the dynamics of the LacI-AraC oscillator in single cells during long time intervals by constructing a microfluidics device. Pulse dynamics of IPTG with different periods serve to perturb this system. Due to the resonance of the system, we predict theoretically and confirm experimentally the dependence on the forcing frequency of the variability in gene expression with time and the synchronization of the population to the input signal. The reported results show that the engineering of gene circuits can provide test cases for dynamical models, which could be further exploited in synthetic biology.
authors.affiliation: Institute of Systems and Synthetic Biology (iSSB), CNRS, F-91000 Évry, France.
authors.forename: Guillermo
authors.initials: G
authors.lastname: Rodrigo
authors.forename: Boris
authors.initials: B
authors.lastname: Kirov
authors.forename: Shensi
authors.initials: S
authors.lastname: Shen
authors.forename: Alfonso
authors.initials: A
authors.lastname: Jaramillo
mesh_terms: D051777:AraC Transcription Factor / Q000378:metabolism*; D004926:Escherichia coli / Q000166:cytology / Q000235:genetics; D025461:Feedback, Physiological; D053263:Gene Regulatory Networks; D056968:Lac Repressors / Q000378:metabolism*; D008957:Models, Genetic; D017711:Nonlinear Dynamics; D010641:Phenotype; D015203:Reproducibility of Results
chemical_list: D051777:AraC Transcription Factor; D056968:Lac Repressors