title: Reanalysis and revision of the complete mitochondrial genome of Rachycentron canadum (Teleostei, Perciformes, Rachycentridae).
abstract: The complete mitochondrial genome of cobia, Rachycentron canadum, was reanalyzed and revised. The genome is 18,008 bp in length, containing 13 protein-coding genes, 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region or displacement loop (D-loop). The gene arrangement is identical to that observed in most vertebrates. Base composition on the heavy strand is 30.14% A, 25.22% C, 15.80% G and 28.84% T. The D-loop region exhibits an A + T rich pattern, containing short tandem repeats of TATATACATGG, TATATGCACAA and TATATGCACGG. The mitochondrial genome studied differs from the previously published genome in two segments; the control region to 12S and ND5 to tRNA(Glu). The 12S sequence also differs from those published in the databases. Phylogeny analyses revealed that the differences could be due to errors in sequence assembly and/or sample misidentification of the previous studies.
authors.affiliation: School of Science, Walailak University , Nakhon Si Thammarat , Thailand and.
authors.forename: Jidapa
authors.initials: J
authors.lastname: Musika
authors.forename: Adison
authors.initials: A
authors.lastname: Khongchatee
authors.forename: Jaros
authors.initials: J
authors.lastname: Phinchongsakuldit
mesh_terms: D000818:Animals; D054629:Genome, Mitochondrial; D018895:Microsatellite Repeats; D008969:Molecular Sequence Data; D010473:Perciformes / Q000235:genetics*; D011506:Proteins / Q000235:genetics; D012335:RNA, Ribosomal / Q000235:genetics; D012343:RNA, Transfer / Q000235:genetics
chemical_list: D011506:Proteins; D012335:RNA, Ribosomal; D012343:RNA, Transfer
keywords: Cobia; Rachycentron canadum; mitochondrial genome