title: The Composition of Microbiome in Larynx and the Throat Biodiversity between Laryngeal Squamous Cell Carcinoma Patients and Control Population.
abstract: The throat is an ecological assemblage involved human cells and microbiota, and the colonizing bacteria are important factors in balancing this environment. However, this bacterial community profile has thus been poorly investigated. The purpose of this study was to investigate the microbial biology of the larynx and to analyze the throat biodiversity in laryngeal carcinoma patients compared to a control population in a case-control study. Barcoded pyrosequencing analysis of the 16S rRNA gene was used. We collected tissue samples from 29 patients with laryngeal carcinoma and 31 control patients with vocal cord polyps. The findings of high-quality sequence datasets revealed 218 genera from 13 phyla in the laryngeal mucosa. The predominant communities of phyla in the larynx were Firmicutes (54%), Fusobacteria (17%), Bacteroidetes (15%), Proteobacteria (11%), and Actinobacteria (3%). The leading genera were Streptococcus (36%), Fusobacterium (15%), Prevotella (12%), Neisseria (6%), and Gemella (4%). The throat bacterial compositions were highly different between laryngeal carcinoma subjects and control population (p = 0.006). The abundance of the 26 genera was significantly different between the laryngeal cancer and control groups by metastats analysis (p<0.05). Fifteen genera may be associated with laryngeal carcinoma by partial least squares discriminant analysis (p<0.001). In summary, this study revealed the microbiota profiles in laryngeal mucosa from tissue specimens. The compositions of bacteria community in throat were different between laryngeal cancer patients and controls, and probably were related with this carcinoma. The disruption of this bio-ecological niche might be a risk factor for laryngeal carcinoma.
authors.affiliation: Department of Otolaryngology, Eye, Ear, Nose, and Throat Hospital, Fudan University, Shanghai, China.
authors.forename: Hong-Li
authors.initials: HL
authors.lastname: Gong
authors.forename: Yi
authors.initials: Y
authors.lastname: Shi
authors.forename: Liang
authors.initials: L
authors.lastname: Zhou
authors.forename: Chun-Ping
authors.initials: CP
authors.lastname: Wu
authors.forename: Peng-Yu
authors.initials: PY
authors.lastname: Cao
authors.forename: Lei
authors.initials: L
authors.lastname: Tao
authors.forename: Chen
authors.initials: C
authors.lastname: Xu
authors.forename: Dong-Sheng
authors.initials: DS
authors.lastname: Hou
authors.forename: Yue-Zhu
authors.initials: YZ
authors.lastname: Wang
mesh_terms: D001419:Bacteria / Q000145:classification* / Q000235:genetics; D044822:Biodiversity; D002294:Carcinoma, Squamous Cell / Q000382:microbiology*; D016022:Case-Control Studies; D005260:Female; D006801:Humans; D007822:Laryngeal Neoplasms / Q000382:microbiology*; D007830:Larynx / Q000382:microbiology*; D008297:Male; D064307:Microbiota; D010614:Pharynx / Q000382:microbiology*; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D012336:RNA, Ribosomal, 16S