title: Predicting carcinogenicity of diverse chemicals using probabilistic neural network modeling approaches.
abstract: Robust global models capable of discriminating positive and non-positive carcinogens; and predicting carcinogenic potency of chemicals in rodents were developed. The dataset of 834 structurally diverse chemicals extracted from Carcinogenic Potency Database (CPDB) was used which contained 466 positive and 368 non-positive carcinogens. Twelve non-quantum mechanical molecular descriptors were derived. Structural diversity of the chemicals and nonlinearity in the data were evaluated using Tanimoto similarity index and Brock-Dechert-Scheinkman statistics. Probabilistic neural network (PNN) and generalized regression neural network (GRNN) models were constructed for classification and function optimization problems using the carcinogenicity end point in rat. Validation of the models was performed using the internal and external procedures employing a wide series of statistical checks. PNN constructed using five descriptors rendered classification accuracy of 92.09% in complete rat data. The PNN model rendered classification accuracies of 91.77%, 80.70% and 92.08% in mouse, hamster and pesticide data, respectively. The GRNN constructed with nine descriptors yielded correlation coefficient of 0.896 between the measured and predicted carcinogenic potency with mean squared error (MSE) of 0.44 in complete rat data. The rat carcinogenicity model (GRNN) applied to the mouse and hamster data yielded correlation coefficient and MSE of 0.758, 0.71 and 0.760, 0.46, respectively. The results suggest for wide applicability of the inter-species models in predicting carcinogenic potency of chemicals. Both the PNN and GRNN (inter-species) models constructed here can be useful tools in predicting the carcinogenicity of new chemicals for regulatory purposes.
authors.affiliation: Academy of Scientific and Innovative Research, Council of Scientific & Industrial Research, New Delhi, India; Environmental Chemistry Division, CSIR-Indian Institute of Toxicology Research, Post Box 80, Mahatma Gandhi Marg, Lucknow 226 001, India. Electronic address: kpsingh_52@yahoo.com.
authors.forename: Kunwar P
authors.initials: KP
authors.lastname: Singh
authors.forename: Shikha
authors.initials: S
authors.lastname: Gupta
authors.forename: Premanjali
authors.initials: P
authors.lastname: Rai
mesh_terms: D000818:Animals; D002273:Carcinogens / Q000737:chemistry* / Q000633:toxicity*; D006224:Cricetinae; D016208:Databases, Factual; D051379:Mice; D015233:Models, Statistical; D016571:Neural Networks, Computer; D011237:Predictive Value of Tests; D051381:Rats; D012044:Regression Analysis; D013045:Species Specificity
chemical_list: D002273:Carcinogens
keywords: Carcinogenicity; Diversity; Generalized regression neural network; Interspecies model; Molecular descriptors; Probabilistic neural network