title: Interaction between 25S rRNA A loop and eukaryotic translation initiation factor 5B promotes subunit joining and ensures stringent AUG selection.
abstract: In yeast, 25S rRNA makes up the major mass and shape of the 60S ribosomal subunit. During the last step of translation initiation, eukaryotic initiation factor 5B (eIF5B) promotes the 60S subunit joining with the 40S initiation complex (IC). Malfunctional 60S subunits produced by misfolding or mutation may disrupt the 40S IC stalling on the start codon, thereby altering the stringency of initiation. Using several point mutations isolated by random mutagenesis, here we studied the role of 25S rRNA in start codon selection. Three mutations changing bases near the ribosome surface had strong effects, allowing the initiating ribosomes to skip both AUG and non-AUG codons: C2879U and U2408C, altering the A loop and P loop, respectively, of the peptidyl transferase center, and G1735A, mapping near a Eukarya-specific bridge to the 40S subunit. Overexpression of eIF5B specifically suppressed the phenotype caused by C2879U, suggesting functional interaction between eIF5B and the A loop. In vitro reconstitution assays showed that C2879U decreased eIF5B-catalyzed 60S subunit joining with a 40S IC. Thus, eIF5B interaction with the peptidyl transferase center A loop increases the accuracy of initiation by stabilizing the overall conformation of the 80S initiation complex. This study provides an insight into the effect of ribosomal mutations on translation profiles in eukaryotes.
authors.affiliation: Molecular Cellular and Developmental Biology Program, Kansas State University, Manhattan, Kansas, USA.
authors.forename: Hiroyuki
authors.initials: H
authors.lastname: Hiraishi
authors.forename: Byung-Sik
authors.initials: BS
authors.lastname: Shin
authors.forename: Tsuyoshi
authors.initials: T
authors.lastname: Udagawa
authors.forename: Naoki
authors.initials: N
authors.lastname: Nemoto
authors.forename: Wasimul
authors.initials: W
authors.lastname: Chowdhury
authors.forename: Jymie
authors.initials: J
authors.lastname: Graham
authors.forename: Christian
authors.initials: C
authors.lastname: Cox
authors.forename: Megan
authors.initials: M
authors.lastname: Reid
authors.forename: Susan J
authors.initials: SJ
authors.lastname: Brown
authors.forename: Katsura
authors.initials: K
authors.lastname: Asano
mesh_terms: D050976:Basic-Leucine Zipper Transcription Factors / Q000235:genetics / Q000378:metabolism; D018387:Codon, Initiator / Q000235:genetics / Q000378:metabolism; D039642:Eukaryotic Initiation Factors / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D005800:Genes, Fungal; D008958:Models, Molecular; D009154:Mutation; D009690:Nucleic Acid Conformation; D010442:Peptide Chain Initiation, Translational; D010458:Peptidyl Transferases / Q000737:chemistry / Q000378:metabolism; D011487:Protein Conformation; D012331:RNA, Fungal / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism; D012335:RNA, Ribosomal / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D054683:Ribosome Subunits, Large, Eukaryotic / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D012441:Saccharomyces cerevisiae / Q000235:genetics / Q000378:metabolism; D029701:Saccharomyces cerevisiae Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*
chemical_list: D050976:Basic-Leucine Zipper Transcription Factors; D018387:Codon, Initiator; D039642:Eukaryotic Initiation Factors; C501391:GCN4 protein, S cerevisiae; D012331:RNA, Fungal; D012333:RNA, Messenger; D012335:RNA, Ribosomal; D029701:Saccharomyces cerevisiae Proteins; C451459:eukaryotic initiation factor-5B; C065039:RNA, ribosomal, 25S; D010458:Peptidyl Transferases