title: Exploring GpG bases next to anticodon in tRNA subsets.
abstract: Transfer RNA (tRNA) structure, modifications and functions are evolutionary and established in bacteria, archaea and eukaryotes. Typically the tRNA modifications are indispensable for its stability and are required for decoding the mRNA into amino acids for protein synthesis. A conserved methylation has been located on the anticodon loop specifically at the 37(th) position and it is next to the anticodon bases. This modification is called as m1G37 and it is catalyzed by tRNA (m(1)G37) methyltransferase (TrmD). It is deciphered that G37 positions occur on few additional amino acids specific tRNA subsets in bacteria. Furthermore, Archaea and Eukaryotes have more number of tRNA subsets which contains G37 position next to the anticodon and the G residue are located at different positions such as G36, G37, G38, 39, and G40. In eight bacterial species, G (guanosine) residues are presents at the 37(th) and 38(th) position except three tRNA subsets having G residues at 36(th) and 39(th) positions. Therefore we propose that m1G37 modification may be feasible at 36(th), 37(th), 38(th), 39(th) and 40(th) positions next to the anticodon of tRNAs. Collectively, methylation at G residues close to the anticodon may be possible at different positions and without restriction of anticodon 3(rd) base A, C, U or G.
authors.affiliation: DST-FIST Bioinformatics & Principal Investigator, School of Genomics, Department of Advanced Zoology and Biotechnology, Loyola College, Chennai - 600 034, Tamil Nadu, India.
authors.forename: Thangavelu
authors.initials: T
authors.lastname: Srinivasan
authors.forename: Kubendiran
authors.initials: K
authors.lastname: Kumaran
authors.forename: Rajendran
authors.initials: R
authors.lastname: Selvakumar
authors.forename: Devadasan
authors.initials: D
authors.lastname: Velmurugan
authors.forename: Dorairaj
authors.initials: D
authors.lastname: Sudarsanam
keywords: Anticodon; Codon; m1G modification; tRNAs