title: Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan.
abstract: The complete genomic sequence of Habenaria mosaic virus (HaMV), which infects terrestrial orchids (Habenaria radiata), has been determined. The genome is composed of 9,499 nucleotides excluding the 3'-terminal poly(A) tail, encoding a large polyprotein of 3,054 amino acids with the genomic features typical of a potyvirus. Putative proteolytic cleavage sites were identified by sequence comparison to those of known potyviruses. The HaMV polyprotein showed 58 % amino acid sequence identity to that encoded by the most closely related potyvirus, tobacco vein banding mosaic virus. Phylogenetic analysis of the polyprotein amino acid sequence and its coding sequences confirmed that HaMV formed a cluster with the chilli veinal mottle virus group, most of which infect solanaceous plants. These results suggest that HaMV is a distinct member of the genus Potyvirus.
authors.affiliation: Institute of Plant Science and Resources (IPSR), Okayama University, Kurashiki, 710-0046, Japan, hkondo@rib.okayama.u-ac.jp.
authors.forename: Hideki
authors.initials: H
authors.lastname: Kondo
authors.forename: Takanori
authors.initials: T
authors.lastname: Maeda
authors.forename: I Wayan
authors.initials: IW
authors.lastname: Gara
authors.forename: Sotaro
authors.initials: S
authors.lastname: Chiba
authors.forename: Kazuyuki
authors.initials: K
authors.lastname: Maruyama
authors.forename: Tetsuo
authors.initials: T
authors.lastname: Tamada
authors.forename: Nobuhiro
authors.initials: N
authors.lastname: Suzuki
mesh_terms: D000595:Amino Acid Sequence; D059646:Genome Size; D016679:Genome, Viral; D007564:Japan; D008969:Molecular Sequence Data; D029595:Orchidaceae / Q000821:virology*; D010802:Phylogeny; D010935:Plant Diseases / Q000821:virology*; D017800:Potyvirus / Q000737:chemistry / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification*; D016415:Sequence Alignment; D014764:Viral Proteins / Q000737:chemistry / Q000235:genetics
chemical_list: D014764:Viral Proteins