title: [Complexes of antiparallel telomeric G-quadruplex d(TTAGGG)4 with carboxymethyl tetracationic porphyrins].
abstract: Porphyrins comprise a chemical class widely used in drug design. Cationic porphyrins may bind to DNA guanine quadruplexes. We report the parameters of binding of 5,10,15,20-tetrakis(N-carboxymethyl-4-pyridinium)porphyrin (P1) and 5,10,15,20-tetrakis(N-etoxy-carbonylmethyl-4-pyridinium)porphyrin (P2) to antiparallel telomeric G-quadruplex formed by d(TTAGGG)4 sequence (TelQ). The binding constants (K(i)) and the number of binding sites (N(i)) were determined from absorption isotherms generated from absorption spectra of complexes of P1 and P2 with TelQ. Compound P1 demonstrated a high affinity to TelQ (K1 = (40 +/- 6) x 10(6) M(-1), N1 = 1; K2 = (5.4 +/- 0.4) x 10(6) M(-1), N = 2). In contrast, the binding constants of P2-TelQ complexes (K1 = (3.1 +/- 0.2) x 10(6) M(-1), N1 = 1; K2 = (1.2 +/- 0.2) x x 10(6) M(-1), N2 = 2) were one order of magnitude smaller than the respective values for P2-TelQ complexes. Measurements of quantum yield and fluorescence lifetime of drug-TelQ complexes revealed two types of binding sites for P1 and P2 on the quadruplex oligonucleotide. The 'strong' complexes can result from interaction of the porphyrinswith TTA loops whereas the weaker complexes are formed with G-quartets. The altered TelQ conformation detected by circular dichroism spectra of P1-TelQ complexes can be explained by a disruption of a G-quartet. We conclude that peripheral carboxy groups contribute tothe high affinity of P1 for the antiparallel telomeric G-quadruplex.
authors.forename: O A
authors.initials: OA
authors.lastname: Kovaleva
authors.forename: A K
authors.initials: AK
authors.lastname: Shchelkina
authors.forename: O K
authors.initials: OK
authors.lastname: Mamaeva
authors.forename: V A
authors.initials: VA
authors.lastname: Ol'shevskaia
authors.forename: A V
authors.initials: AV
authors.lastname: Makarenkov
authors.forename: A S
authors.initials: AS
authors.lastname: Semeĭkin
authors.forename: A A
authors.initials: AA
authors.lastname: Shtil'
authors.forename: O F
authors.initials: OF
authors.lastname: Borisova
authors.forename: D N
authors.initials: DN
authors.lastname: Kaliuzhnyĭ
mesh_terms: D005453:Fluorescence; D015394:Molecular Structure; D009838:Oligodeoxyribonucleotides / Q000737:chemistry*; D011166:Porphyrins / Q000737:chemistry*
chemical_list: D009838:Oligodeoxyribonucleotides; D011166:Porphyrins