title: Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds.
abstract: The purple sulfur bacterium Allochromatium vinosum DSM 180(T) is one of the best-studied sulfur-oxidizing anoxygenic phototrophic bacteria, and it has been developed into a model organism for laboratory-based studies of oxidative sulfur metabolism. Here, we took advantage of the organism's high metabolic versatility and performed whole-genome transcriptional profiling to investigate the response of A. vinosum cells upon exposure to sulfide, thiosulfate, elemental sulfur, or sulfite compared to photoorganoheterotrophic growth on malate. Differential expression of 1,178 genes was observed, corresponding to 30% of the A. vinosum genome. Relative transcription of 551 genes increased significantly during growth on one of the different sulfur sources, while the relative transcript abundance of 627 genes decreased. A significant number of genes that revealed strongly enhanced relative transcription levels have documented sulfur metabolism-related functions. Among these are the dsr genes, including dsrAB for dissimilatory sulfite reductase, and the sgp genes for the proteins of the sulfur globule envelope, thus confirming former results. In addition, we identified new genes encoding proteins with appropriate subcellular localization and properties to participate in oxidative dissimilatory sulfur metabolism. Those four genes for hypothetical proteins that exhibited the strongest increases of mRNA levels on sulfide and elemental sulfur, respectively, were chosen for inactivation and phenotypic analyses of the respective mutant strains. This approach verified the importance of the encoded proteins for sulfur globule formation during the oxidation of sulfide and thiosulfate and thereby also documented the suitability of comparative transcriptomics for the identification of new sulfur-related genes in anoxygenic phototrophic sulfur bacteria.
authors.affiliation: Institut für Mikrobiologie und Biotechnologie, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn, Germany.
authors.forename: Thomas
authors.initials: T
authors.lastname: Weissgerber
authors.forename: Nadine
authors.initials: N
authors.lastname: Dobler
authors.forename: Tino
authors.initials: T
authors.lastname: Polen
authors.forename: Jeanette
authors.initials: J
authors.lastname: Latus
authors.forename: Yvonne
authors.initials: Y
authors.lastname: Stockdreher
authors.forename: Christiane
authors.initials: C
authors.lastname: Dahl
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism*; D002841:Chromatiaceae / Q000235:genetics* / Q000254:growth & development* / Q000378:metabolism; D003470:Culture Media / Q000737:chemistry; D020869:Gene Expression Profiling; D015964:Gene Expression Regulation, Bacterial; D005798:Genes, Bacterial; D016680:Genome, Bacterial; D050885:Hydrogensulfite Reductase / Q000235:genetics / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis; D010084:Oxidation-Reduction; D013440:Sulfides / Q000378:metabolism; D013447:Sulfites / Q000378:metabolism; D013455:Sulfur / Q000378:metabolism; D013457:Sulfur Compounds / Q000378:metabolism*; D013885:Thiosulfates / Q000378:metabolism
chemical_list: D001426:Bacterial Proteins; D003470:Culture Media; D013440:Sulfides; D013447:Sulfites; D013457:Sulfur Compounds; D013885:Thiosulfates; D013455:Sulfur; D050885:Hydrogensulfite Reductase