title: Potential toxicity of sarafloxacin to catalase: spectroscopic, ITC and molecular docking descriptions.
abstract: The interaction between sarafloxacin and catalase (CAT) was studied by fluorescence spectroscopy, UV-visible absorption spectroscopy, circular dichroism (CD) spectroscopy, isothermal titration microcalorimetry (ITC) and molecular docking method. After deducting the inner filter effect, the fluorescence of CAT was quenched regularly by different concentrations of sarafloxacin. The quenching mechanism was studied by lifetime measurement, and it was proved to be mostly due to static quenching. The formation of sarafloxacin-CAT complex alters the micro-environment of amide moieties and tryptophan (Trp) residues, reduces the α-helix content of the enzyme, changes the peripheral substituents on the porphyrin ring of heme and leads to the inhibition of the enzyme activity. Molecular docking study reveals that sarafloxacin is located between two α-helix of CAT near to Trp 182 and Trp 185 residues, which supports the experimental results and helps to have a more clear understanding about the interaction mechanism. The change in the relative position of His 74 to heme induced by the variation of secondary structure is considered to be the major reason for the reduction of CAT activity. Moreover, sarafloxacin binds into a hydrophobic area of CAT mainly through hydrophobic interactions, which is consistent with the ITC analysis.
authors.affiliation: School of Environmental Science and Engineering, China-America CRC for Environment & Health, Shandong University, 27# Shanda South Road, Jinan 250100, Shandong Province, PR China.
authors.forename: Zhaozhen
authors.initials: Z
authors.lastname: Cao
authors.forename: Rutao
authors.initials: R
authors.lastname: Liu
authors.forename: Bingjun
authors.initials: B
authors.lastname: Yang
mesh_terms: D000818:Animals; D001665:Binding Sites; D002151:Calorimetry; D002374:Catalase / Q000737:chemistry* / Q000378:metabolism; D002417:Cattle; D002939:Ciprofloxacin / Q000031:analogs & derivatives* / Q000633:toxicity; D002942:Circular Dichroism; D062105:Molecular Docking Simulation; D011485:Protein Binding / Q000187:drug effects; D017433:Protein Structure, Secondary; D013050:Spectrometry, Fluorescence; D013056:Spectrophotometry, Ultraviolet; D013816:Thermodynamics; D013997:Time Factors; D017186:Titrimetry
chemical_list: D002939:Ciprofloxacin; D002374:Catalase; C047224:sarafloxacin
keywords: Activity inhibition; Catalase; ITC; Molecular docking; Sarafloxacin; Spectroscopy