title: Colony size optimisation in colony-based laser imaging for microbial source tracking.
abstract: The colony-based laser scatter imaging provides a convincing solution to microbial source tracking. The optical scattering patterns of bacterial colonies are tightly correlated to the corresponding growth patterns. This relationship is manifested as the development of optical scattering patterns with the increment of colony size. An investigation was conducted into this relationship and the optimal range of colony size for improving the accuracy of microbial source tracking technique. All the bacterial samples from five host species were cultivated under the same conditions. The optical scattering patterns were recorded for the average colony diameter from 0.1 mm to 1.5 mm, using a bench top laser imaging system. Gabor wavelet was utilised to encode image signatures. Fuzzy-C-means was employed to cluster the colony patterns from the same host species. The experimental results demonstrate that the optimal range of the colony diameters is 0.8-1.0 mm. The corresponding identification rate of microbial source tracking is >80%.
authors.affiliation: Department of Biomedical Engineering, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA. haog1@vt.edu
authors.forename: Hao
authors.initials: H
authors.lastname: Gong
authors.forename: Bin
authors.initials: B
authors.lastname: Chen
authors.forename: Xu
authors.initials: X
authors.lastname: Zhang
authors.forename: Charles C
authors.initials: CC
authors.lastname: Tseng
mesh_terms: D001419:Bacteria / Q000302:isolation & purification*; D015169:Colony Count, Microbial / Q000379:methods*; D007834:Lasers; D012542:Scattering, Radiation