title: Use of Next Generation Sequencing (NGS) technologies for the genome-wide detection of transposition.
abstract: Plant transposable elements are ubiquitous in eukaryotes. Their propensity to densely populate the genomes of many plants and animal species has put them in the focus of both structural and functional genomics. Although a number of bioinformatic software have been recently developed for the annotation of TEs in sequenced genomes, there are very few computational tools strictly dedicated to the identification of active TEs using genome-wide approaches. In this paper, we describe SearchTESV, a pipeline that we have developed to detect Transposable Elements-associated structural variants (TEASVs) using Next Generation Sequencing (NGS) technologies.
authors.affiliation: Laboratoire Génome et développement des plantes, Université de Perpignan Via Domitia, Perpignan, Cedex, France.
authors.forename: Moaine
authors.initials: M
authors.lastname: Elbaidouri
authors.forename: Cristian
authors.initials: C
authors.lastname: Chaparro
authors.forename: Olivier
authors.initials: O
authors.lastname: Panaud
mesh_terms: D004251:DNA Transposable Elements / Q000235:genetics*; D018744:DNA, Plant / Q000235:genetics; D023281:Genomics / Q000379:methods*; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods*; D058977:Molecular Sequence Annotation; D016254:Mutagenesis, Insertional; D015203:Reproducibility of Results; D017422:Sequence Analysis, DNA / Q000379:methods*
chemical_list: D004251:DNA Transposable Elements; D018744:DNA, Plant