title: Statistical analysis of the hen's egg test for micronucleus induction (HET-MN assay).
abstract: The HET-MN assay (hen's egg test for micronucleus induction) is different from other in vitro genotoxicity assays in that it includes toxicologically important features such as absorption, distribution, metabolic activation, and excretion of the test compound. As a promising follow-up to complement existing in vitro test batteries for genotoxicity, the HET-MN is currently undergoing a formal validation. To optimize the validation, the present study describes a critical analysis of previously obtained HET-MN data to check the experimental design and to identify the most appropriate statistical procedure to evaluate treatment effects. Six statistical challenges (I-VI) of general relevance were identified, and remedies were provided which can be transferred to similarly designed test methods: a Williams-type trend test is proposed for overdispersed counts (II) by means of a square-root transformation which is robust for small sample sizes (I), variance heterogeneity (III), and possible downturn effects at high doses (IV). Due to near-to-zero or even zero-count data occurring in the negative control (V), a conditional comparison of the treatment groups against the mean of the historical controls (VI) instead of the concurrent control was proposed, which is in accordance with US-FDA recommendations. For the modified Williams-type tests, the power can be estimated depending on the magnitude and shape of the trend, the number of dose groups, and the magnitude of the MN counts in the negative control. The experimental design used previously (i.e. six eggs per dose group, scoring of 1000 cells per egg) was confirmed. The proposed approaches are easily available in the statistical computing environment R, and the corresponding R-codes are provided.
authors.affiliation: Leibniz Universität Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany.
authors.forename: Ludwig A
authors.initials: LA
authors.lastname: Hothorn
authors.forename: Kerstin
authors.initials: K
authors.lastname: Reisinger
authors.forename: Thorsten
authors.initials: T
authors.lastname: Wolf
authors.forename: Albrecht
authors.initials: A
authors.lastname: Poth
authors.forename: Dagmar
authors.initials: D
authors.lastname: Fieblinger
authors.forename: Manfred
authors.initials: M
authors.lastname: Liebsch
authors.forename: Ralph
authors.initials: R
authors.lastname: Pirow
mesh_terms: D000818:Animals; D002645:Chickens; D003627:Data Interpretation, Statistical; D004305:Dose-Response Relationship, Drug; D006801:Humans; D015162:Micronucleus Tests / Q000379:methods*; D014481:United States; D014486:United States Food and Drug Administration
keywords: HET-MN assay; Historical control; Williams-trend test