title: Comparative analysis of gene expression profiles of acute hepatic failure and that of liver regeneration in rat.
abstract: To explore the relevance of rat liver regeneration (LR) to acute hepatic failure (AHF), Rat Genome 230 2.0 Array was used to detect their gene expression profiles in this study, and the reliability of the detection results was confirmed by real-time-PCR. 1012 genes were found to be significantly changed in AHF occurrence and 948 genes in LR. Hierarchical clustering analysis showed that physiological activities of AHF and those of LR had no time correlation. Hierarchical clustering analysis (which is performed to group genes based on the similarity of expression patterns) showed that physiological activities of AHF and those of LR had no time correlation. K-means clustering analysis (which is used to check the difference in the relevant predictor variables between different groups is significant or not) demonstrated that gene expression trend of C1 group (genes relate to categories of stimulus-response and cell apoptosis, etc.) in AHF and in LR was extremely similar, that those of their C2 group (categories of regulation of homeostasis and hormone stimulation, etc.) were contrary, and that those of their C3 (material and energy metabolism and oxidation reduction, etc.), C4 (Cell cycle-related genes) and C5 (cell proliferation-related genes) groups were also similar with the gene expression changes of LR more abundant. GO classifications and functional clustering analysis (which was used to statistics the numbers or composition of proteins or genes at a function level) revealed that cellular processes including immune response, inflammatory reaction, cell migration and adhesion, etc. were increased both in AHF and in LR, whereas material and energy metabolism were decreased. Of them, stimulus response, inflammatory reaction and regulation of apoptosis, etc. were stronger in AHF occurrence than in LR, but ion homeostasis, hormonal response, regulation of cell division and proliferation, etc. were weaker in AHF occurrence. Gene expression changes and physiological activities of AHF and those of LR not only have similarities but also differences.
authors.affiliation: College of Life Sciences, Henan Normal University, Xinxiang 453007, Henan Province, China. cellkeylab@126.com
authors.forename: Cunshuan
authors.initials: C
authors.lastname: Xu
authors.forename: Weiming
authors.initials: W
authors.lastname: Zhao
authors.forename: Yunpeng
authors.initials: Y
authors.lastname: Hao
authors.forename: Cuifang
authors.initials: C
authors.lastname: Chang
authors.forename: Jinyu
authors.initials: J
authors.lastname: Fan
mesh_terms: D000818:Animals; D002251:Carbon Tetrachloride; D018797:Cell Cycle Proteins / Q000235:genetics / Q000378:metabolism; D016000:Cluster Analysis; D004734:Energy Metabolism / Q000235:genetics; D007155:Immunologic Factors / Q000235:genetics / Q000378:metabolism; D008099:Liver / Q000502:physiology; D017114:Liver Failure, Acute / Q000139:chemically induced / Q000235:genetics* / Q000378:metabolism; D008115:Liver Regeneration / Q000235:genetics*; D008297:Male; D053858:Metabolic Networks and Pathways / Q000235:genetics; D058977:Molecular Sequence Annotation; D020411:Oligonucleotide Array Sequence Analysis; D051381:Rats; D017207:Rats, Sprague-Dawley; D060888:Real-Time Polymerase Chain Reaction; D059467:Transcriptome
chemical_list: D018797:Cell Cycle Proteins; D007155:Immunologic Factors; D002251:Carbon Tetrachloride
keywords: A; AHF; Acute hepatic failure (AHF); CCl(4); Gene expression profiles; HGF; LR; Liver regeneration (LR); M; NC; P; PH; Physiological activity; RT-PCR; SD; SO; Sprague–Dawley; absent; acute hepatic failure; carbon tetrachloride; hepatocyte growth factor; liver regeneration; marginal; normal control; partial hepatectomy; present; real-time polymerase chain reaction; sham-operated