title: Insilico modeling and molecular dynamic simulation of claudin-1 point mutations in HCV infection.
abstract: Claudin-1 (CLDN1) in association with envelope glycoprotein (CD81) mediates the fusion of HCV into the cytosol. Recent studies have indicated that point mutations in CLDN1 are important for the entry of hepatitis C virus (HCV). To validate these findings, we employed a computational platform to investigate the structural effect of two point mutations (I32M and E48K). Initially, three-dimensional co-ordinates for CLDN1 receptor sequence were generated. Then, three mutant models were built using the point mutation including a double mutant (I32M/E48K) model from the native model structure. Finally, all the four model structures including the native and three mutant models were subjected to molecular dynamics (MD) simulation for a period of 25 ns to appreciate their dynamic behavior. The MD trajectory files were analyzed using cluster and principal component method. The analysis suggested that either of the single mutation has negligible effect on the overall structure of CLDN1 compared to the double mutant form. However, the double mutant model of CLDN1 shows significant negative impact through the impairment of H-bonds and the simultaneous increase in solvent accessible surface area. Our simulation results are visibly consistent with the experimental report suggesting that the CLDN1 receptor distortion is prominent due to the double mutation with large surface accessibility. This increase in accessible surface area due to the coexistence of double mutation may be presumed as one of the key factor that results in permissive action of HCV attachment and infection.
authors.affiliation: a School of Bio Sciences and Technology, Bioinformatics Division , VIT University , Vellore , Tamilnadu , 632014 , India .
authors.forename: Bhavaniprasad
authors.initials: B
authors.lastname: Vipperla
authors.forename: J Febin Prabhu
authors.initials: JF
authors.lastname: Dass
authors.forename: S
authors.initials: S
authors.lastname: Jayanthi
mesh_terms: D062445:Claudin-1 / Q000737:chemistry* / Q000235:genetics; D003198:Computer Simulation; D016174:Hepacivirus / Q000502:physiology*; D006801:Humans; D056004:Molecular Dynamics Simulation; D017354:Point Mutation; D011487:Protein Conformation; D053586:Virus Internalization
chemical_list: D062445:Claudin-1
keywords: claudin-1; clustering analysis; hepatitis C virus; molecular dynamics simulations; principal component analysis