Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic web technologies.
A semantically coded knowledge base of adverse drug events (ADEs) with severity information is critical for clinical decision support systems and translational research applications. However it remains challenging to measure and identify the severity information of ADEs. The objective of the study is to develop and evaluate a semantic web based approach for building a knowledge base of severe ADEs based on the FDA Adverse Event Reporting System (AERS) reporting data. We utilized a normalized AERS reporting dataset and extracted putative drug-ADE pairs and their associated outcome codes in the domain of cardiac disorders. We validated the drug-ADE associations using ADE datasets from SIDe Effect Resource (SIDER) and the UMLS. We leveraged the Common Terminology Criteria for Adverse Event (CTCAE) grading system and classified the ADEs into the CTCAE in the Web Ontology Language (OWL). We identified and validated 2,444 unique Drug-ADE pairs in the domain of cardiac disorders, of which 760 pairs are in Grade 5, 775 pairs in Grade 4 and 2,196 pairs in Grade 3.
Department of Health Sciences Research, Division of Biomedical Statistics & Informatics, Mayo Clinic College of Medicine, Rochester, MN, USA.
Guoqian
G
Jiang
Liwei
L
Wang
Hongfang
H
Liu
Harold R
HR
Solbrig
Christopher G
CG
Chute
D016907:Adverse Drug Reaction Reporting Systems / Q000706:statistics & numerical data*; D003628:Database Management Systems; D016208:Databases, Factual / Q000706:statistics & numerical data*; D064420:Drug-Related Side Effects and Adverse Reactions / Q000145:classification*; D006801:Humans; D020407:Internet; D051188:Knowledge Bases; D009323:Natural Language Processing; D012660:Semantics; D018875:Vocabulary, Controlled