First-passage properties of molecular spiders.
Molecular spiders are synthetic catalytic DNA-based nanoscale walkers. We study the mean first-passage time for abstract models of spiders moving on a finite two-dimensional lattice with various boundary conditions and compare it with the mean first-passage time of spiders moving on a one-dimensional track. We evaluate by how much the slowdown on newly visited sites, owing to catalysis, can improve the mean first-passage time of spiders and show that in one dimension, when both ends of the track are an absorbing boundary, the performance gain is lower than in two dimensions, when the absorbing boundary is a circle; this persists even when the absorbing boundary is a single site.
Department of Computer Science, University of New Mexico, MSC01 1130, 1 University of New Mexico, Albuquerque, New Mexico 87131-0001, USA. olegsa@cs.unm.edu
Oleg
O
Semenov
David
D
Mohr
Darko
D
Stefanovic
D000818:Animals; D032701:Biomimetics / Q000379:methods*; D021881:DNA, Catalytic / Q000378:metabolism; D004058:Diffusion; D036103:Nanotechnology; D013112:Spiders
D021881:DNA, Catalytic