An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp.
Tomato (Solanum lycopersicum) is the model species for studying fleshy fruit development. An extensive proteome map of the fruit pericarp is described in light of the high-quality genome sequence. The proteomes of fruit pericarp from 12 tomato genotypes at two developmental stages (cell expansion and orange-red) were analyzed. The 2DE reference map included 506 spots identified by nano-LC/MS and the International Tomato Annotation Group Database searching. A total of 425 spots corresponded to unique proteins. Thirty-four spots resulted from the transcription of genes belonging to multigene families involving two to six genes. A total of 47 spots corresponded to a mixture of different proteins. The whole protein set was classified according to Gene Ontology annotation. The quantitative protein variation was analyzed in relation to genotype and developmental stage. This tomato fruit proteome dataset is currently the largest available and constitutes a valuable tool for comparative genetic studies of tomato genome expression at the protein level. All MS data have been deposited in the ProteomeXchange with identifier PXD000105.
INRA, UR1052, Unité de Génétique et Amélioration des Fruits et Légumes, Montfavet, France; College of Horticulture, Northwest A&F University, Yang Ling, P. R. China.
Jiaxin
J
Xu
Laura
L
Pascual
Rémy
R
Aurand
Jean-Paul
JP
Bouchet
Benoît
B
Valot
Michel
M
Zivy
Mathilde
M
Causse
Mireille
M
Faurobert
D005638:Fruit / Q000033:anatomy & histology* / Q000378:metabolism*; D063990:Gene Ontology; D018551:Solanum lycopersicum / Q000033:anatomy & histology* / Q000378:metabolism*; D013058:Mass Spectrometry; D010940:Plant Proteins / Q000378:metabolism; D025341:Principal Component Analysis; D020543:Proteome / Q000378:metabolism*; D040901:Proteomics / Q000379:methods*
D010940:Plant Proteins; D020543:Proteome
Fruit pericarp proteome; Genome sequence; Liquid chromatography-mass spectrometry; Plant proteomics; Tomato; Two-dimensional gel electrophoresis