A meta-analysis study of gene expression datasets in mouse liver under PPARα knockout.
Gene expression profiling of peroxisome-proliferator-activated receptor α (PPARα) has been used in several studies, but there were no consistent results on gene expression patterns involved in PPARα activation in genome-wide due to different sample sizes or platforms. Here, we employed two published microarray datasets both PPARα dependent in mouse liver and applied meta-analysis on them to increase the power of the identification of differentially expressed genes and significantly enriched pathways. As a result, we have improved the concordance in identifying many biological mechanisms involved in PPARα activation. We suggest that our analysis not only leads to more identified genes by combining datasets from different resources together, but also provides some novel hepatic tissue-specific marker genes related to PPARα according to our re-analysis.
School of Agriculture and Biology, Department of Animal Sciences, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China.
Kan
K
He
Zhen
Z
Wang
Qishan
Q
Wang
Yuchun
Y
Pan
D000818:Animals; D020869:Gene Expression Profiling; D008099:Liver / Q000378:metabolism*; D051379:Mice; D018345:Mice, Knockout; D047493:PPAR alpha / Q000235:genetics*
D047493:PPAR alpha