Genome-wide association analysis of aluminum tolerance in cultivated and Tibetan wild barley.
Tibetan wild barley (Hordeum vulgare L. ssp. spontaneum), originated and grown in harsh enviroNment in Tibet, is well-known for its rich germpalsm with high tolerance to abiotic stresses. However, the genetic variation and genes involved in Al tolerance are not totally known for the wild barley. In this study, a genome-wide association analysis (GWAS) was performed by using four root parameters related with Al tolerance and 469 DArT markers on 7 chromosomes within or across 110 Tibetan wild accessions and 56 cultivated cultivars. Population structure and cluster analysis revealed that a wide genetic diversity was present in Tibetan wild barley. Linkage disequilibrium (LD) decayed more rapidly in Tibetan wild barley (9.30 cM) than cultivated barley (11.52 cM), indicating that GWAS may provide higher resolution in the Tibetan group. Two novel Tibetan group-specific loci, bpb-9458 and bpb-8524 were identified, which were associated with relative longest root growth (RLRG), located at 2H and 7H on barely genome, and could explain 12.9% and 9.7% of the phenotypic variation, respectively. Moreover, a common locus bpb-6949, localized 0.8 cM away from a candidate gene HvMATE, was detected in both wild and cultivated barleys, and showed significant association with total root growth (TRG). The present study highlights that Tibetan wild barley could provide elite germplasm novel genes for barley Al-tolerant improvement.
Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China.
Shengguan
S
Cai
Dezhi
D
Wu
Zahra
Z
Jabeen
Yuqing
Y
Huang
Yechang
Y
Huang
Guoping
G
Zhang
D000222:Adaptation, Physiological / Q000187:drug effects / Q000235:genetics*; D000535:Aluminum / Q000633:toxicity*; D056426:Genetic Loci / Q000235:genetics; D005819:Genetic Markers; D018745:Genome, Plant / Q000235:genetics; D055106:Genome-Wide Association Study; D001467:Hordeum / Q000187:drug effects / Q000235:genetics* / Q000254:growth & development*; D015810:Linkage Disequilibrium / Q000235:genetics; D010802:Phylogeny; D018517:Plant Roots / Q000187:drug effects / Q000235:genetics; D011110:Polymorphism, Genetic; D011157:Population Dynamics; D019655:Quantitative Trait, Heritable; D018609:Tibet
D005819:Genetic Markers; D000535:Aluminum