title: Resource use of soilborne Streptomyces varies with location, phylogeny, and nitrogen amendment.
abstract: In this study, we explore variation in resource use among Streptomyces in prairie soils. Resource use patterns were highly variable among Streptomyces isolates and were significantly related to location, phylogeny, and nitrogen (N) amendment history. Streptomyces populations from soils less than 1 m apart differed significantly in their ability to use resources, indicating that drivers of resource use phenotypes in soil are highly localized. Variation in resource use within Streptomyces genetic groups was significantly associated with the location from which Streptomyces were isolated, suggesting that resource use is adapted to local environments. Streptomyces from soils under long-term N amendment used fewer resources and grew less efficiently than those from non-amended soils, demonstrating that N amendment selects for Streptomyces with more limited catabolic capacities. Finally, resource use among Streptomyces populations was correlated with soil carbon content and Streptomyces population densities. We hypothesize that variation in resource use among Streptomyces reflects adaptation to local resource availability and competitive species interactions in soil and that N amendments alter selection for resource use phenotypes.
authors: Daniel C
authors: DC
authors: Schlatter
authors: Anita L
authors: AL
authors: DavelosBaines
authors: Kun
authors: K
authors: Xiao
authors: Linda L
authors: LL
authors: Kinkel
mesh_terms: D002244:Carbon / Q000032:analysis / Q000378:metabolism; D008969:Molecular Sequence Data; D009584:Nitrogen / Q000032:analysis / Q000378:metabolism*; D010802:Phylogeny; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology; D013302:Streptomyces / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*
chemical_list: D012987:Soil; D002244:Carbon; D009584:Nitrogen
references: Res Microbiol. 2012 Sep-Oct;163(8):490-9
references: 22922402
references: FEMS Microbiol Rev. 2010 Mar;34(2):171-98
references: 20088961
references: Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10854-61
references: 15243158
references: Phytopathology. 2005 Feb;95(2):178-85
references: 18943988
references: ISME J. 2011 Jul;5(7):1086-94
references: 21270841
references: ISME J. 2012 May;6(5):1007-17
references: 22134642
references: Nature. 2008 Feb 7;451(7179):712-5
references: 18256670
references: Biol Lett. 2011 Feb 23;7(1):75-8
references: 20685699
references: Annu Rev Phytopathol. 2004;42:243-70
references: 15283667
references: Ecology. 2007 Jun;88(6):1354-64
references: 17601128
references: FEMS Microbiol Rev. 2012 Jul;36(4):862-76
references: 22091965
references: Proc Biol Sci. 2008 Mar 7;275(1634):535-41
references: 18182371
references: Microb Biotechnol. 2011 Mar;4(2):286-99
references: 21342473
references: Ecology. 2010 Dec;91(12):3463-70; discussion 3503-14
references: 21302816
references: PLoS One. 2011;6(11):e27266
references: 22110622
references: PLoS Biol. 2012;10(5):e1001330
references: 22615541
references: Nature. 2001 Jul 5;412(6842):72-6
references: 11452308
references: Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):786-90
references: 11792831
references: EMBO Rep. 2008 Jul;9(7):670-5
references: 18511939
references: Appl Environ Microbiol. 2009 Dec;75(23):7537-41
references: 19801464
references: Appl Environ Microbiol. 2001 Apr;67(4):1830-8
references: 11282640
references: Ecology. 2007 Aug;88(8):2105-13
references: 17824441
references: J Evol Biol. 2008 May;21(3):853-60
references: 18284514
references: Phytopathology. 2013 Jan;103(1):34-42
references: 23035630
references: J Evol Biol. 2010 Jan;23(1):207-11
references: 20002253
references: Antonie Van Leeuwenhoek. 2000 Dec;78(3-4):315-21
references: 11386354
references: Am Nat. 2005 Oct;166(4):470-80
references: 16224703
references: Annu Rev Microbiol. 2004;58:207-31
references: 15487936
references: Microb Ecol. 2001 Feb;41(2):90-96
references: 12032613
references: Nat Rev Microbiol. 2010 Jan;8(1):15-25
references: 19946288
references: Microb Ecol. 2009 Apr;57(3):413-20
references: 18704556
references: Microb Ecol. 2001 Dec;42(4):586-597
references: 12024241
references: Microb Ecol. 2004 Aug;48(2):218-29
references: 15546042
references: Nat Biotechnol. 2006 Dec;24(12):1541-50
references: 17160060
references: FEMS Microbiol Ecol. 2013 Mar;83(3):596-606
references: 23013423
references: Annu Rev Plant Biol. 2013;64:807-38
references: 23373698
references: Antonie Van Leeuwenhoek. 2008 Jun;94(1):63-74
references: 18491216
references: Appl Environ Microbiol. 2004 Feb;70(2):1051-8
references: 14766588
references: Adv Microb Physiol. 2000;42:47-238
references: 10907551
references: Microb Ecol. 2004 Nov;48(4):601-12
references: 15696393
references: Int J Syst Bacteriol. 1996 Apr;46(2):476-9
references: 8934906
references: Annu Rev Phytopathol. 2011;49:47-67
references: 21639781
references: Microb Ecol. 1986 Mar;12(1):43-52
references: 24212456
references: J Antibiot (Tokyo). 2010 Aug;63(8):442-59
references: 20664603
references: Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19780-5
references: 19064910