title: Predominant expression of exon 7 skipped SMN mRNAs in lung based on analysis of transcriptome sequencing datasets.
abstract: Spinal muscular atrophy (SMA) is caused by deletion of SMN1, one of the two SMN (Survival of Motor Neuron) genes. SMN2 is still present in SMA patients but its exon 7 is alternatively spliced. In this study, we took advantage of recent deposit of deep-sequencing datasets from a number of human tissues and examined the expression and splicing of SMN mRNA. We showed that SMN is slightly more abundantly expressed in the lungs and prostate. More interestingly, we found that the percentage of SMNΔ7 in lung and adipose tissue is significantly higher than in other tissues such as the testes, where almost no SMNΔ7 is expressed. Since SMN1 produces more than 95 % of full-length SMN RNA, it is likely that SMN2 has a higher skipping rate of exon 7 in adipose and lung tissue, leading to a higher ratio of SMNΔ7/SMN in these tissues. Given that many SMA patients die from respiratory failure, we speculate that higher skipping of exon 7 in the lungs may play a role in the progression of SMA.
authors: JiangSu Key Laboratory of Neuroregeneration, Nantong University, Nantong, 226007, China.
authors: Xiaoming
authors: X
authors: Yang
authors: Haihong
authors: H
authors: Shen
authors: Xue
authors: X
authors: Gao
authors: Xuexiu
authors: X
authors: Zheng
authors: Ryan
authors: R
authors: Qin
authors: Jianhua
authors: J
authors: Zhou
mesh_terms: D000273:Adipose Tissue / Q000378:metabolism; D000328:Adult; D000368:Aged; D017398:Alternative Splicing; D005091:Exons / Q000235:genetics*; D005260:Female; D020869:Gene Expression Profiling; D006801:Humans; D008168:Lung / Q000378:metabolism*; D008297:Male; D008875:Middle Aged; D012333:RNA, Messenger / Q000378:metabolism*; D055533:Survival of Motor Neuron 1 Protein / Q000235:genetics* / Q000378:metabolism*; D055815:Young Adult
chemical_list: D012333:RNA, Messenger; D055533:Survival of Motor Neuron 1 Protein
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