title: Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach.
abstract: Although the interaction between interleukin-8 (IL-8) and glycosaminoglycans (GAGs) is crucial for the mediation of inflammatory effects, little is known about the site specificity of this interaction. Therefore, we studied complexes of IL-8 and heparin (HEP) as well as other GAGs in a multidisciplinary approach, involving site-directed mutagenesis, mass spectrometry, fluorescence and solution NMR spectroscopy as well as computer modeling. The interaction between GAG and IL-8 is largely driven by the amine groups of the lysine and the guanidinium groups of arginine side chains. However, due to fast exchange with the solvent, it is typically not possible to detect NMR signals of those groups. Here, we applied reductive (13)C-methylation of the lysine side chains providing sensitive NMR probes for monitoring directly the sites of GAG interaction in (1)H-(13)C correlation experiments. We focused on the lysine side chains K25, K28, K59, K69 and K72 of IL-8 (1-77), which were reported to be involved in the binding to GAGs. The NMR signals of these residues were assigned in (1)H-(13)C HSQC spectra through the help of site-directed mutagenesis. NMR and fluorescence titration experiments in combination with molecular docking and molecular dynamics simulations were applied to investigate the involvement of each lysine in the binding with HEP and various GAG hexasaccharides. We identified K25, K69 and K72 to be the most relevant binding anchors of IL-8(1-77) for the analyzed GAGs.
authors: Department of Medicine, Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstraße 16-18, D-04107 Leipzig, Germany.
authors: Kristin
authors: K
authors: Möbius
authors: Karoline
authors: K
authors: Nordsieck
authors: Annelie
authors: A
authors: Pichert
authors: Sergey A
authors: SA
authors: Samsonov
authors: Lars
authors: L
authors: Thomas
authors: Jürgen
authors: J
authors: Schiller
authors: Stefan
authors: S
authors: Kalkhof
authors: M
authors: M
authors: Teresa Pisabarro
authors: Annette G
authors: AG
authors: Beck-Sickinger
authors: Daniel
authors: D
authors: Huster
mesh_terms: D019943:Amino Acid Substitution; D000818:Animals; D019556:COS Cells; D002522:Chlorocebus aethiops; D006025:Glycosaminoglycans / Q000737:chemistry; D006493:Heparin / Q000737:chemistry*; D016209:Interleukin-8 / Q000737:chemistry* / Q000235:genetics / Q000502:physiology; D008239:Lysine / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D008745:Methylation; D056004:Molecular Dynamics Simulation; D010084:Oxidation-Reduction; D011485:Protein Binding; D023062:Receptors, Interleukin-8A / Q000235:genetics / Q000378:metabolism; D015398:Signal Transduction; D012996:Solutions
chemical_list: D006025:Glycosaminoglycans; D016209:Interleukin-8; D023062:Receptors, Interleukin-8A; D012996:Solutions; D006493:Heparin; D008239:Lysine
keywords: NMR; chemokine; electrostatics; protein/glycosaminoglycan interaction; reductive methylation