title: GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
abstract: Data integration is a key challenge for modern bioinformatics. It aims to provide biologists with tools to explore relevant data produced by different studies. Large-scale international projects can generate lots of heterogeneous and unrelated data. The challenge is to integrate this information with other publicly available data. Nucleotide sequencing throughput has been improved with new technologies; this increases the need for powerful information systems able to store, manage and explore data. GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. Here, we illustrate its use. Database URL: http://urgi.versailles.inra.fr/gnpis.
authors: INRA, UR1164 URGI - Research Unit in Genomics-Info, INRA de Versailles, Route de Saint-Cyr, Versailles, 78026, France.
authors: Delphine
authors: D
authors: Steinbach
authors: Michael
authors: M
authors: Alaux
authors: Joelle
authors: J
authors: Amselem
authors: Nathalie
authors: N
authors: Choisne
authors: Sophie
authors: S
authors: Durand
authors: Raphaël
authors: R
authors: Flores
authors: Aminah-Olivia
authors: AO
authors: Keliet
authors: Erik
authors: E
authors: Kimmel
authors: Nicolas
authors: N
authors: Lapalu
authors: Isabelle
authors: I
authors: Luyten
authors: Célia
authors: C
authors: Michotey
authors: Nacer
authors: N
authors: Mohellibi
authors: Cyril
authors: C
authors: Pommier
authors: Sébastien
authors: S
authors: Reboux
authors: Dorothée
authors: D
authors: Valdenaire
authors: Daphné
authors: D
authors: Verdelet
authors: Hadi
authors: H
authors: Quesneville
mesh_terms: D030541:Databases, Genetic; D005658:Fungi / Q000235:genetics*; D016681:Genome, Fungal / Q000235:genetics*; D018745:Genome, Plant / Q000235:genetics*; D023281:Genomics; D007391:International Cooperation; D010944:Plants / Q000235:genetics*; D057386:Search Engine; D014908:Triticum / Q000235:genetics
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