title: Three-dimensional reconstruction of brain structures of the rodent Octodon degus: a brain atlas constructed by combining histological and magnetic resonance images.
abstract: Degus (Octodon degus) are rodents that are becoming more widely used in the neuroscience field. Degus display several more complex behaviors than rats and mice, including complicated social behaviors, vocal communications, and tool usage with superb manual dexterity. However, relatively little information is known about the anatomy of degu brains. Therefore, for these complex behaviors to be correlated with specific brain regions, a contemporary atlas of the degu brain is required. This manuscript describes the construction of a three-dimensional (3D) volume rendered model of the degu brain that combines histological and magnetic resonance images. This atlas provides several advantages, including the ability to visualize the surface of the brain from any angle. The atlas also permits virtual cutting of brain sections in any plane and provides stereotaxic coordinates for all sections, to be beneficial for both experimental surgeries and radiological studies. The reconstructed 3D atlas is freely available online at: http://brainatlas.brain.riken.jp/degu/modules/xoonips/listitem.php?index_id=24 .
authors.affiliation: Laboratory for Symbolic Cognitive Development, RIKEN, Brain Science Institute, Wako, Saitama, 351-0198, Japan, nkuma@brain.riken.jp.
authors.forename: Noriko
authors.initials: N
authors.lastname: Kumazawa-Manita
authors.forename: Mariko
authors.initials: M
authors.lastname: Katayama
authors.forename: Tsutomu
authors.initials: T
authors.lastname: Hashikawa
authors.forename: Atsushi
authors.initials: A
authors.lastname: Iriki
mesh_terms: D000818:Animals; D001271:Atlases as Topic; D001921:Brain / Q000033:anatomy & histology*; D001931:Brain Mapping; D004396:Coloring Agents; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional; D008279:Magnetic Resonance Imaging / Q000379:methods*; D009493:Neurosurgery; D046329:Octodon / Q000033:anatomy & histology*; D012015:Reference Standards; D012984:Software; D013238:Stereotaxic Techniques
chemical_list: D004396:Coloring Agents