title: Heterologous reconstitution of the intact geodin gene cluster in Aspergillus nidulans through a simple and versatile PCR based approach.
abstract: Fungal natural products are a rich resource for bioactive molecules. To fully exploit this potential it is necessary to link genes to metabolites. Genetic information for numerous putative biosynthetic pathways has become available in recent years through genome sequencing. However, the lack of solid methodology for genetic manipulation of most species severely hampers pathway characterization. Here we present a simple PCR based approach for heterologous reconstitution of intact gene clusters. Specifically, the putative gene cluster responsible for geodin production from Aspergillus terreus was transferred in a two step procedure to an expression platform in A. nidulans. The individual cluster fragments were generated by PCR and assembled via efficient USER fusion prior to transformation and integration via re-iterative gene targeting. A total of 13 open reading frames contained in 25 kb of DNA were successfully transferred between the two species enabling geodin synthesis in A. nidulans. Subsequently, functions of three genes in the cluster were validated by genetic and chemical analyses. Specifically, ATEG_08451 (gedC) encodes a polyketide synthase, ATEG_08453 (gedR) encodes a transcription factor responsible for activation of the geodin gene cluster and ATEG_08460 (gedL) encodes a halogenase that catalyzes conversion of sulochrin to dihydrogeodin. We expect that our approach for transferring intact biosynthetic pathways to a fungus with a well developed genetic toolbox will be instrumental in characterizing the many exciting pathways for secondary metabolite production that are currently being uncovered by the fungal genome sequencing projects.
authors.affiliation: Department of Systems Biology, Technical University of Denmark, Kgs. Lyngby, Denmark.
authors.forename: Morten Thrane
authors.initials: MT
authors.lastname: Nielsen
authors.forename: Jakob Blæsbjerg
authors.initials: JB
authors.lastname: Nielsen
authors.forename: Diana Chinyere
authors.initials: DC
authors.lastname: Anyaogu
authors.forename: Dianna Chinyere
authors.initials: DC
authors.lastname: Anyaogu
authors.forename: Dorte Koefoed
authors.initials: DK
authors.lastname: Holm
authors.forename: Kristian Fog
authors.initials: KF
authors.lastname: Nielsen
authors.forename: Thomas Ostenfeld
authors.initials: TO
authors.lastname: Larsen
authors.forename: Uffe Hasbro
authors.initials: UH
authors.lastname: Mortensen
mesh_terms: D001233:Aspergillus nidulans / Q000235:genetics* / Q000378:metabolism*; D001572:Benzofurans / Q000378:metabolism*; D053898:Biosynthetic Pathways; D003001:Cloning, Molecular; D019143:Evolution, Molecular; D015966:Gene Expression Regulation, Fungal; D023061:Gene Order; D005800:Genes, Fungal; D005822:Genetic Vectors; D005810:Multigene Family; D016366:Open Reading Frames; D016133:Polymerase Chain Reaction / Q000379:methods; D014157:Transcription Factors / Q000378:metabolism
chemical_list: D001572:Benzofurans; D014157:Transcription Factors; C052047:geodin