title: Microbial diversity in The Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem.
abstract: The Cedars, in coastal northern California, is an active site of peridotite serpentinization. The spring waters that emerge from this system feature very high pH, low redox potential, and low ionic concentrations, making it an exceptionally challenging environment for life. We report a multiyear, culture-independent geomicrobiological study of three springs at The Cedars that differ with respect to the nature of the groundwater feeding them. Within each spring, both geochemical properties and microbial diversity in all three domains of life remained stable over a 3-y period, with multiple samples each year. Between the three springs, however, the microbial communities showed considerable differences that were strongly correlated with the source of the serpentinizing groundwater. In the spring fed solely by deep groundwater, phylum Chloroflexi, class Clostridia, and candidate division OD1 were the major taxa with one phylotype in Euryarchaeota. Less-abundant phylotypes include several minor members from other candidate divisions and one phylotype that was an outlier of candidate division OP3. In the springs fed by the mixture of deep and shallow groundwater, organisms close to the Hydrogenophaga within Betaproteobacteria dominated and coexisted with the deep groundwater community members. The shallow groundwater community thus appears to be similar to those described in other terrestrial serpentinizing sites, whereas the deep community is distinctly different from any other previously described terrestrial serpentinizing community. These unique communities have the potential to yield important insights into the development and survival of life in these early-earth analog environments.
authors.affiliation: Department of Microbial and Environmental Genomics, J. Craig Venter Institute, San Diego, CA 92121.
authors.forename: Shino
authors.initials: S
authors.lastname: Suzuki
authors.forename: Shun'ichi
authors.initials: S
authors.lastname: Ishii
authors.forename: Angela
authors.initials: A
authors.lastname: Wu
authors.forename: Andrea
authors.initials: A
authors.lastname: Cheung
authors.forename: Aaron
authors.initials: A
authors.lastname: Tenney
authors.forename: Greg
authors.initials: G
authors.lastname: Wanger
authors.forename: J Gijs
authors.initials: JG
authors.lastname: Kuenen
authors.forename: Kenneth H
authors.initials: KH
authors.lastname: Nealson
mesh_terms: D017632:Asbestos, Serpentine / Q000737:chemistry; D001483:Base Sequence; D044822:Biodiversity; D002140:California; D041862:Chloroflexi / Q000235:genetics; D000458:Cyanobacteria / Q000235:genetics; D017753:Ecosystem; D019605:Euryarchaeota / Q000235:genetics; D006094:Gram-Positive Bacteria / Q000235:genetics; D006863:Hydrogen-Ion Concentration; D054892:Metagenome / Q000235:genetics*; D008969:Molecular Sequence Data; D060985:Natural Springs / Q000737:chemistry* / Q000382:microbiology*; D010084:Oxidation-Reduction; D020560:Proteobacteria / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017423:Sequence Analysis, RNA
chemical_list: D017632:Asbestos, Serpentine; D012336:RNA, Ribosomal, 16S
keywords: alkaliphile; biodiversity; extremophile; hydrogen; small subunit rRNA