title: Theoretical electrical conductivity of hydrogen-bonded benzamide-derived molecules and single DNA bases.
abstract: A benzamide molecule is used as a "reader" molecule to form hydrogen bonds with five single DNA bases, i.e., four normal single DNA bases A,T,C,G and one for 5methylC. The whole molecule is then attached to the gold surface so that a meta-molecule junction is formed. We calculate the transmission function and conductance for the five metal-molecule systems, with the implementation of density functional theory-based non-equilibrium Green function method. Our results show that each DNA base exhibits a unique conductance and most of them are on the pS level. The distinguishable conductance of each DNA base provides a way for the fast sequencing of DNA. We also investigate the dependence of conductivity of such a metal-molecule system on the hydrogen bond length between the "reader" molecule and DNA base, which shows that conductance follows an exponential decay as the hydrogen bond length increases, i.e., the conductivity is highly sensitive to the change in hydrogen bond length.
authors.affiliation: Department of Physics, Center for Biological Physics Arizona State University, Tempe, AZ 85287-1504, USA. chen.sqq@gmail.com
authors.forename: Xiang
authors.initials: X
authors.lastname: Chen
mesh_terms: D001549:Benzamides / Q000737:chemistry*; D004247:DNA / Q000737:chemistry*; D004553:Electric Conductivity; D006046:Gold / Q000737:chemistry; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008968:Molecular Conformation; D011789:Quantum Theory; D013499:Surface Properties; D013816:Thermodynamics
chemical_list: D001549:Benzamides; C037689:benzamide; D006046:Gold; D004247:DNA