title: Asymmetry of the active site loop conformation between subunits of glutamate-1-semialdehyde aminomutase in solution.
abstract: Glutamate-1-semialdehyde aminomutase (GSAM) is a dimeric, pyridoxal 5'-phosphate (PLP)- dependent enzyme catalysing in plants and some bacteria the isomerization of L-glutamate-1-semialdehyde to 5-aminolevulinate, a common precursor of chlorophyll, haem, coenzyme B12, and other tetrapyrrolic compounds. During the catalytic cycle, the coenzyme undergoes conversion from pyridoxamine 5'-phosphate (PMP) to PLP. The entrance of the catalytic site is protected by a loop that is believed to switch from an open to a closed conformation during catalysis. Crystallographic studies indicated that the structure of the mobile loop is related to the form of the cofactor bound to the active site, allowing for asymmetry within the dimer. Since no information on structural and functional asymmetry of the enzyme in solution is available in the literature, we investigated the active site accessibility by determining the cofactor fluorescence quenching of PMP- and PLP-GSAM forms. PLP-GSAM is partially quenched by potassium iodide, suggesting that at least one catalytic site is accessible to the anionic quencher and therefore confirming the asymmetry observed in the crystal structure. Iodide induces release of the cofactor from PMP-GSAM, apparently from only one catalytic site, therefore suggesting an asymmetry also in this form of the enzyme in solution, in contrast with the crystallographic data.
authors.affiliation: Dipartimento di Farmacia, Università di Parma, Parco Area delle Scienze 23/A, 43124 Parma, Italy.
authors.forename: Barbara
authors.initials: B
authors.lastname: Campanini
authors.forename: Stefano
authors.initials: S
authors.lastname: Bettati
authors.forename: Martino Luigi
authors.initials: ML
authors.lastname: di Salvo
authors.forename: Andrea
authors.initials: A
authors.lastname: Mozzarelli
authors.forename: Roberto
authors.initials: R
authors.lastname: Contestabile
mesh_terms: D000042:Absorption; D055162:Biocatalysis / Q000187:drug effects; D020134:Catalytic Domain; D003067:Coenzymes / Q000378:metabolism; D018360:Crystallography, X-Ray; D019751:Intramolecular Transferases / Q000737:chemistry* / Q000378:metabolism*; D011193:Potassium Iodide / Q000494:pharmacology; D055503:Protein Multimerization / Q000187:drug effects; D017433:Protein Structure, Secondary; D021122:Protein Subunits / Q000737:chemistry* / Q000378:metabolism*; D011732:Pyridoxal Phosphate / Q000378:metabolism; D011733:Pyridoxamine / Q000378:metabolism; D012996:Solutions; D013050:Spectrometry, Fluorescence; D046940:Synechococcus / Q000201:enzymology*
chemical_list: D003067:Coenzymes; D021122:Protein Subunits; D012996:Solutions; D011193:Potassium Iodide; D011732:Pyridoxal Phosphate; D011733:Pyridoxamine; D019751:Intramolecular Transferases; C061049:glutamate-1-semialdehyde 2,1-aminomutase