title: Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov.
abstract: Peptoniphilus senegalensis strain JC140(T) sp. nov., is the type strain of P. senegalensis sp. nov., a new species within the genus Peptoniphilus. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. P. senegalensis strain JC140(T) is an obligate Gram-positive anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,840,641 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 32.2% and contains 1,744 protein-coding and 23 RNA genes, including 3 rRNA genes.
authors.affiliation: Aix-Marseille Université, Faculté de médecine, Marseille, France.
authors.forename: Ajay Kumar
authors.initials: AK
authors.lastname: Mishra
authors.forename: Jean-Christophe
authors.initials: JC
authors.lastname: Lagier
authors.forename: Thi-Tien
authors.initials: TT
authors.lastname: Nguyen
authors.forename: Didier
authors.initials: D
authors.lastname: Raoult
authors.forename: Pierre-Edouard
authors.initials: PE
authors.lastname: Fournier
keywords: Peptoniphilus senegalensis; genome
references.citation: Int J Syst Evol Microbiol. 2011 Aug;61(Pt 8):1962-1967
references.pmid: 20817843
references.citation: Clin Microbiol Infect. 2012 Dec;18(12):1185-93
references.pmid: 23033984
references.citation: Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9
references.pmid: 2112744
references.citation: Nat Genet. 2000 May;25(1):25-9
references.pmid: 10802651
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):221-32
references.pmid: 23407462
references.citation: Stand Genomic Sci. 2012 Jul 30;6(3):315-24
references.pmid: 23408657
references.citation: Nat Biotechnol. 2008 May;26(5):541-7
references.pmid: 18464787
references.citation: Int J Syst Evol Microbiol. 2010 May;60(Pt 5):1009-1010
references.pmid: 20458120
references.citation: Bioinformatics. 2000 Oct;16(10):944-5
references.pmid: 11120685
references.citation: Stand Genomic Sci. 2012 Jul 30;6(3):346-55
references.pmid: 23408487
references.citation: Clin Infect Dis. 2009 Aug 15;49(4):543-51
references.pmid: 19583519
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):200-9
references.pmid: 23407294
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):233-45
references.pmid: 23408786
references.citation: Stand Genomic Sci. 2012 Oct 10;7(1):1-11
references.pmid: 23449949
references.citation: J Clin Microbiol. 2007 Jun;45(6):1746-52
references.pmid: 17428937
references.citation: Lancet Infect Dis. 2011 Dec;11(12):925-32
references.pmid: 21856232
references.citation: Nucleic Acids Res. 1997 Mar 1;25(5):955-64
references.pmid: 9023104
references.citation: J Mol Biol. 2004 Jul 16;340(4):783-95
references.pmid: 15223320
references.citation: Bioinformatics. 2009 Jan 1;25(1):119-20
references.pmid: 18990721
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):258-70
references.pmid: 23408774
references.citation: J Med Microbiol. 1994 Jul;41(1):36-44
references.pmid: 8006943
references.citation: N Engl J Med. 2011 Jul 28;365(4):347-57
references.pmid: 21793746
references.citation: J Mol Biol. 2001 Jan 19;305(3):567-80
references.pmid: 11152613
references.citation: Genome Res. 2004 Jul;14(7):1394-403
references.pmid: 15231754
references.citation: Stand Genomic Sci. 2012 Mar 19;6(1):116-25
references.pmid: 22675604
references.citation: Int J Syst Evol Microbiol. 2001 Jul;51(Pt 4):1521-1528
references.pmid: 11491354
references.citation: Stand Genomic Sci. 2012 Jul 30;6(3):386-95
references.pmid: 23408737
references.citation: Stand Genomic Sci. 2012 Oct 10;7(1):70-81
references.pmid: 23459006
references.citation: Nucleic Acids Res. 2007;35(9):3100-8
references.pmid: 17452365