title: Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov.
abstract: Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,162,233 bp long genome (1 chromosome but no plasmid) contains 2,623 protein-coding and 49 RNA genes, including three rRNA genes.
authors.affiliation: Aix-Marseille Université, Faculté de médecine, Marseille, France.
authors.forename: Perrine
authors.initials: P
authors.lastname: Hugon
authors.forename: Dhamodharan
authors.initials: D
authors.lastname: Ramasamy
authors.forename: Jean-Christophe
authors.initials: JC
authors.lastname: Lagier
authors.forename: Romain
authors.initials: R
authors.lastname: Rivet
authors.forename: Carine
authors.initials: C
authors.lastname: Couderc
authors.forename: Didier
authors.initials: D
authors.lastname: Raoult
authors.forename: Pierre-Edouard
authors.initials: PE
authors.lastname: Fournier
keywords: Alistipes obesi; culturomics; genome; taxono-genomics
references.citation: Stand Genomic Sci. 2012 Oct 10;7(1):1-11
references.pmid: 23449949
references.citation: Pediatr Infect Dis J. 2000 Nov;19(11):1078-83
references.pmid: 11099090
references.citation: Clin Microbiol Infect. 2012 Dec;18(12):1185-93
references.pmid: 23033984
references.citation: Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9
references.pmid: 2112744
references.citation: Nat Genet. 2000 May;25(1):25-9
references.pmid: 10802651
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):221-32
references.pmid: 23407462
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):258-70
references.pmid: 23408774
references.citation: Stand Genomic Sci. 2012 Jul 30;6(3):315-24
references.pmid: 23408657
references.citation: Nat Biotechnol. 2008 May;26(5):541-7
references.pmid: 18464787
references.citation: Emerg Infect Dis. 2007 Aug;13(8):1260-2
references.pmid: 17953110
references.citation: Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1985-1990
references.pmid: 16902041
references.citation: J Mol Biol. 2001 Jan 19;305(3):567-80
references.pmid: 11152613
references.citation: Int J Syst Evol Microbiol. 2003 Nov;53(Pt 6):1701-2
references.pmid: 14657096
references.citation: Stand Genomic Sci. 2012 Jul 30;6(3):346-55
references.pmid: 23408487
references.citation: Clin Infect Dis. 2009 Aug 15;49(4):543-51
references.pmid: 19583519
references.citation: Int J Syst Evol Microbiol. 2010 Jun;60(Pt 6):1296-1302
references.pmid: 19667375
references.citation: BMC Bioinformatics. 2011 Apr 28;12:124
references.pmid: 21526987
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):200-9
references.pmid: 23407294
references.citation: Stand Genomic Sci. 2012 Dec 19;7(2):233-45
references.pmid: 23408786
references.citation: Nucleic Acids Res. 1997 Mar 1;25(5):955-64
references.pmid: 9023104
references.citation: J Mol Biol. 2004 Jul 16;340(4):783-95
references.pmid: 15223320
references.citation: Stand Genomic Sci. 2012 Mar 19;6(1):116-25
references.pmid: 22675604
references.citation: Syst Appl Microbiol. 2003 Jun;26(2):182-8
references.pmid: 12866844
references.citation: Stand Genomic Sci. 2012 Jul 30;6(3):386-95
references.pmid: 23408737
references.citation: Crit Care. 2002 Jun;6(3):205-11
references.pmid: 12133179
references.citation: Stand Genomic Sci. 2012 Oct 10;7(1):70-81
references.pmid: 23459006
references.citation: Nucleic Acids Res. 2007;35(9):3100-8
references.pmid: 17452365