WormBase: Annotating many nematode genomes.
WormBase (www.wormbase.org) has been serving the scientific community for over 11 years as the central repository for genomic and genetic information for the soil nematode Caenorhabditis elegans. The resource has evolved from its beginnings as a database housing the genomic sequence and genetic and physical maps of a single species, and now represents the breadth and diversity of nematode research, currently serving genome sequence and annotation for around 20 nematodes. In this article, we focus on WormBase's role of genome sequence annotation, describing how we annotate and integrate data from a growing collection of nematode species and strains. We also review our approaches to sequence curation, and discuss the impact on annotation quality of large functional genomics projects such as modENCODE.
European Bioinformatics Institute; Wellcome Trust Genome Campus; Hinxton, Cambridge UK.
Kevin
K
Howe
Paul
P
Davis
Michael
M
Paulini
Mary Ann
MA
Tuli
Gary
G
Williams
Karen
K
Yook
Richard
R
Durbin
Paul
P
Kersey
Paul W
PW
Sternberg
Caenorhabditis elegans; annotation; community resource; genome; model organism database; nematode; parasitic nematode; sequence curation