Afrotheria genome; overestimation of genome size and distinct chromosome GC content revealed by flow karyotyping.
Afrotheria genome size is reported to be over 50% larger than that of human, but we show that this is a gross overestimate. Although genome sequencing in Afrotheria is not complete, extensive homology with human has been revealed by chromosome painting. We provide new data on chromosome size and GC content in four Afrotherian species using flow karyotyping. Genome sizes are 4.13 Gb in aardvark, 4.01 Gb in African elephant, 3.69 Gb in golden mole and 3.31 Gb in manatee, whereas published results show a mean of 5.18 Gb for Afrotheria. Genome GC content shows a negative correlation with size, indicating that this is due to differences in the amount of AT-rich sequences. Low genome GC content and small variance in chromosome GC content are characteristic of aardvark and elephant and may be associated with the high degree of conserved synteny, suggesting that these are features of the Afrotherian ancestral genome.
Department of Veterinary Medicine, University of Cambridge, UK. Electronic address: k-230@umin.ac.jp.
Fumio
F
Kasai
Department of Veterinary Medicine, University of Cambridge, UK.
Patricia C M
PC
O'Brien
Department of Veterinary Medicine, University of Cambridge, UK.
Malcolm A
MA
Ferguson-Smith
D000818:Animals; D001482:Base Composition; D002478:Cells, Cultured; D033481:Chromosomes, Mammalian; D019143:Evolution, Molecular; D005260:Female; D059646:Genome Size; D006801:Humans; D007621:Karyotyping; D008297:Male; D008322:Mammals / Q000145:classification* / Q000235:genetics*; D010802:Phylogeny
Afrotheria; Chromosome profile; GC content; Genome evolution; Genome size