title: Denoising and fast diffusion imaging with physically constrained sparse dictionary learning.
abstract: Diffusion-weighted imaging (DWI) allows imaging the geometry of water diffusion in biological tissues. However, DW images are noisy at high b-values and acquisitions are slow when using a large number of measurements, such as in Diffusion Spectrum Imaging (DSI). This work aims to denoise DWI and reduce the number of required measurements, while maintaining data quality. To capture the structure of DWI data, we use sparse dictionary learning constrained by the physical properties of the signal: symmetry and positivity. The method learns a dictionary of diffusion profiles on all the DW images at the same time and then scales to full brain data. Its performance is investigated with simulations and two real DSI datasets. We obtain better signal estimates from noisy measurements than by applying mirror symmetry through the q-space origin, Gaussian denoising or state-of-the-art non-local means denoising. Using a high-resolution dictionary learnt on another subject, we show that we can reduce the number of images acquired while still generating high resolution DSI data. Using dictionary learning, one can denoise DW images effectively and perform faster acquisitions. Higher b-value acquisitions and DSI techniques are possible with approximately 40 measurements. This opens important perspectives for the connectomics community using DSI.
authors.affiliation: Institut Mines-Telecom, Telecom ParisTech, CNRS LTCI, Paris, France; INRIA, Parietal Team, Saclay, France; NeuroSpin, CEA Saclay, Bat. 145, 91191 Gif-sur-Yvette Cedex, France. Electronic address: alexandre.gramfort@telecom-paristech.fr.
authors.forename: A
authors.initials: A
authors.lastname: Gramfort
authors.forename: C
authors.initials: C
authors.lastname: Poupon
authors.forename: M
authors.initials: M
authors.lastname: Descoteaux
mesh_terms: D000465:Algorithms; D001185:Artificial Intelligence; D001921:Brain / Q000033:anatomy & histology*; D056324:Diffusion Tensor Imaging / Q000379:methods*; D006801:Humans; D007089:Image Enhancement / Q000379:methods*; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D010363:Pattern Recognition, Automated / Q000379:methods*; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity; D059629:Signal-To-Noise Ratio
keywords: Denoising; Diffusion Spectrum Imaging (DSI); Diffusion-weighted imaging; Sparse coding; Undersampling