title: CpG dinucleotide frequencies reveal the role of host methylation capabilities in parvovirus evolution.
abstract: Parvoviruses are rapidly evolving viruses that infect a wide range of hosts, including vertebrates and invertebrates. Extensive methylation of the parvovirus genome has been recently demonstrated. A global pattern of methylation of CpG dinucleotides is seen in vertebrate genomes, compared to "fractional" methylation patterns in invertebrate genomes. It remains unknown if the loss of CpG dinucleotides occurs in all viruses of a given DNA virus family that infect host species spanning across vertebrates and invertebrates. We investigated the link between the extent of CpG dinucleotide depletion among autonomous parvoviruses and the evolutionary lineage of the infected host. We demonstrate major differences in the relative abundance of CpG dinucleotides among autonomous parvoviruses which share similar genome organization and common ancestry, depending on the infected host species. Parvoviruses infecting vertebrate hosts had significantly lower relative abundance of CpG dinucleotides than parvoviruses infecting invertebrate hosts. The strong correlation of CpG dinucleotide depletion with the gain in TpG/CpA dinucleotides and the loss of TpA dinucleotides among parvoviruses suggests a major role for CpG methylation in the evolution of parvoviruses. Our data present evidence that links the relative abundance of CpG dinucleotides in parvoviruses to the methylation capabilities of the infected host. In sum, our findings support a novel perspective of host-driven evolution among autonomous parvoviruses.
authors.affiliation: Kusuma School of Biological Sciences, Indian Institute of Technology Delhi, New Delhi, India.
authors.forename: Mohita
authors.initials: M
authors.lastname: Upadhyay
authors.forename: Jasmine
authors.initials: J
authors.lastname: Samal
authors.forename: Manish
authors.initials: M
authors.lastname: Kandpal
authors.forename: Suhas
authors.initials: S
authors.lastname: Vasaikar
authors.forename: Banhi
authors.initials: B
authors.lastname: Biswas
authors.forename: James
authors.initials: J
authors.lastname: Gomes
authors.forename: Perumal
authors.initials: P
authors.lastname: Vivekanandan
mesh_terms: D000818:Animals; D019175:DNA Methylation; D015226:Dinucleoside Phosphates / Q000235:genetics* / Q000378:metabolism; D019143:Evolution, Molecular; D016679:Genome, Viral; D054884:Host-Pathogen Interactions; D006801:Humans; D007448:Invertebrates / Q000235:genetics / Q000378:metabolism / Q000821:virology*; D008745:Methylation; D008969:Molecular Sequence Data; D010322:Parvoviridae Infections / Q000235:genetics / Q000378:metabolism / Q000662:veterinary* / Q000821:virology*; D017992:Parvovirus / Q000145:classification / Q000235:genetics* / Q000502:physiology; D010802:Phylogeny; D014714:Vertebrates / Q000235:genetics / Q000378:metabolism / Q000821:virology*
chemical_list: D015226:Dinucleoside Phosphates; C015772:CpG dinucleotide