title: Biological noise abatement: coordinating the responses of autonomous bacteria in a synthetic biofilm to a fluctuating environment using a stochastic bistable switch.
abstract: Noise is inherent to single cell behavior. Its origins can be traced to the stochasticity associated with a few copies of genes and low concentrations of protein and ligands. We have studied the mechanisms by which the response of noisy elements can be entrained for biological signal processing. To elicit predictable biological function, we have engineered a gene environment that incorporates a gene regulatory network with the stringently controlled microenvironment found in a synthetic biofilm. The regulatory network leverages the positive feedback found in quorum-sensing regulatory components of the lux operon, which is used to coordinate cellular responses to environmental fluctuations. Accumulation of the Lux receptor in cells, resulting from autoregulation, confers a rapid response and enhanced sensitivity to the quorum-sensing molecule that is retained after cell division as epigenetic memory. The memory of the system channels stochastic noise into a coordinated response among quorum-sensing signal receivers in a synthetic biofilm in which the noise diminishes with repeated exposure to noisy transmitters on the input of a signaling cascade integrated into the same biofilm. Thus, gene expression in the receivers, which are autonomous and do not communicate with each other, is synchronized to fluctuations in the environment.
authors.affiliation: Department of Biological Sciences and Electrical Engineering, University of Notre Dame , Notre Dame, Indiana 46556, United States.
authors.forename: Edward M
authors.initials: EM
authors.lastname: Nelson
authors.forename: Volker
authors.initials: V
authors.lastname: Kurz
authors.forename: Nicolas
authors.initials: N
authors.lastname: Perry
authors.forename: Douglas
authors.initials: D
authors.lastname: Kyrouac
authors.forename: Gregory
authors.initials: G
authors.lastname: Timp
mesh_terms: D001419:Bacteria / Q000166:cytology / Q000378:metabolism; D018441:Biofilms; D053263:Gene Regulatory Networks; D006706:Homeostasis; D008954:Models, Biological; D053038:Quorum Sensing / Q000502:physiology*; D015398:Signal Transduction; D013269:Stochastic Processes; D058615:Synthetic Biology