title: Animal Viruses Probe dataset (AVPDS) for microarray-based diagnosis and identification of viruses.
abstract: AVPDS (Animal Viruses Probe dataset) is a dataset of virus-specific and conserve oligonucleotides for identification and diagnosis of viruses infecting animals. The current dataset contain 20,619 virus specific probes for 833 viruses and their subtypes and 3,988 conserved probes for 146 viral genera. Dataset of virus specific probe has been divided into two fields namely virus name and probe sequence. Similarly conserved probes for virus genera table have genus, and subgroup within genus name and probe sequence. The subgroup within genus is artificially divided subgroups with no taxonomic significance and contains probes which identifies viruses in that specific subgroup of the genus. Using this dataset we have successfully diagnosed the first case of Newcastle disease virus in sheep and reported a mixed infection of Bovine viral diarrhea and Bovine herpesvirus in cattle. These dataset also contains probes which cross reacts across species experimentally though computationally they meet specifications. These probes have been marked. We hope that this dataset will be useful in microarray-based detection of viruses. The dataset can be accessed through the link https://dl.dropboxusercontent.com/u/94060831/avpds/HOME.html.
authors.affiliation: Division of Biochemistry, Indian Veterinary Research Institute, Izatnagar, India, brijeshbioinfo@gmail.com.
authors.forename: Brijesh S
authors.initials: BS
authors.lastname: Yadav
authors.forename: Mayank
authors.initials: M
authors.lastname: Pokhriyal
authors.forename: Dinesh P
authors.initials: DP
authors.lastname: Vasishtha
authors.forename: Bhaskar
authors.initials: B
authors.lastname: Sharma
mesh_terms: D000818:Animals; D030561:Databases, Nucleic Acid; D046228:Microarray Analysis / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods; D015345:Oligonucleotide Probes; D014730:Veterinary Medicine / Q000379:methods*; D014773:Virology / Q000379:methods*; D014777:Virus Diseases / Q000662:veterinary* / Q000821:virology; D014780:Viruses / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*
chemical_list: D015345:Oligonucleotide Probes