title: Arrayed profiling of multiple glycans on whole living cell surfaces.
abstract: An array-based method for profiling and quantification of multiple glycans on whole living cell surfaces was developed through combining DNA encoding technology with DNA microarray. Using four kinds of lectins as the model to recognize four types of cell surface glycans, the specific barcode-lectin probes that contained the endonuclease cutting site were designed. The barcode-lectin probes had the DNA sequences complementary to four sequences immobilized on a DNA microarray, respectively. After the living cells were incubated with the mixture of four barcode-lectin probes, these probes could bind to cell surface through the specific interaction between the lectins and corresponding glycans. Thus, the glycans and their amounts could be profiled by releasing the barcodes from cell surface with endonuclease cleaving, binding the barcodes to DNA microarray with specific hybridization, and then producing the amplified fluorescence signal with hybridization chain reaction (HCR). The HCR was performed with two kinds of Cy5 labeled hairpins. The average amount of mannose, N-acetylgalactosamine, N-acetylglucosamine, and N-acetylneuraminic acid on BGC cell was obtained to be 6.8 × 10(7), 3.8 × 10(7), 2.1 × 10(8), and 1.1 × 10(7) moieties per cell, respectively. The proposed method possessed whole cell surface accessibility, powerful distinguishing capability, fast recognition kinetics, easy miniaturization, and high throughput without need of cell pretreatment or labeling. It could become a powerful tool for elucidation of the complex glycan-related biological processes.
authors.affiliation: State Key Laboratory of Analytical Chemistry for Life Science, Department of Chemistry, Nanjing University , Nanjing, Jiangsu 210093, P. R. China.
authors.forename: Yunlong
authors.initials: Y
authors.lastname: Chen
authors.forename: Lin
authors.initials: L
authors.lastname: Ding
authors.forename: Tingting
authors.initials: T
authors.lastname: Liu
authors.forename: Huangxian
authors.initials: H
authors.lastname: Ju
mesh_terms: D002462:Cell Membrane / Q000378:metabolism*; D005434:Flow Cytometry; D006801:Humans; D037102:Lectins / Q000378:metabolism*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D011134:Polysaccharides / Q000032:analysis* / Q000378:metabolism; D013274:Stomach Neoplasms / Q000378:metabolism*
chemical_list: D037102:Lectins; D011134:Polysaccharides