title: Inheritable and precise large genomic deletions of non-coding RNA genes in zebrafish using TALENs.
abstract: Transcription activator-like effector nucleases (TALENs) have so far been applied to disrupt protein-coding genes which constitute only 2-3% of the genome in animals. The majority (70-90%) of the animal genome is actually transcribed as non-coding RNAs (ncRNAs), yet the lack of efficient tools to knockout ncRNA genes hinders studies on their in vivo functions. Here we have developed novel strategies using TALENs to achieve precise and inheritable large genomic deletions and knockout of ncRNA genes in zebrafish. We have demonstrated that individual miRNA genes could be disrupted using one pair of TALENs, whereas large microRNA (miRNA) gene clusters and long non-coding RNA (lncRNA) genes could be precisely deleted using two pairs of TALENs. We have generated large genomic deletions of two miRNA clusters (the 1.2 kb miR-17-92 cluster and the 79.8 kb miR-430 cluster) and one long non-coding RNA (lncRNA) gene (the 9.0 kb malat1), and the deletions are transmitted through the germline. Taken together, our results establish TALENs as a robust tool to engineer large genomic deletions and knockout of ncRNA genes, thus opening up new avenues in the application of TALENs to study the genome in vivo.
authors.affiliation: School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong, China ; School of Biomedical Sciences Core Laboratory, The Chinese University of Hong Kong Shenzhen Research Institute, Shenzhen, China.
authors.forename: Yun
authors.initials: Y
authors.lastname: Liu
authors.forename: Daji
authors.initials: D
authors.lastname: Luo
authors.forename: Hui
authors.initials: H
authors.lastname: Zhao
authors.forename: Zuoyan
authors.initials: Z
authors.lastname: Zhu
authors.forename: Wei
authors.initials: W
authors.lastname: Hu
authors.forename: Christopher H K
authors.initials: CH
authors.lastname: Cheng
mesh_terms: D000818:Animals; D001483:Base Sequence; D003851:Deoxyribonucleases / Q000378:metabolism*; D055786:Gene Knockout Techniques; D005818:Genetic Engineering / Q000379:methods*; D023281:Genomics; D005854:Germ Cells / Q000378:metabolism; D035683:MicroRNAs / Q000235:genetics; D005810:Multigene Family / Q000235:genetics; D022661:RNA, Untranslated / Q000235:genetics*; D015027:Zebrafish / Q000235:genetics*
chemical_list: D035683:MicroRNAs; D022661:RNA, Untranslated; D003851:Deoxyribonucleases