title: Probing the origins of two-state folding.
abstract: Many protein systems fold in a two-state manner. Random models, however, rarely display two-state kinetics and thus such behavior should not be accepted as a default. While theories for the prevalence of two-state kinetics have been presented, none sufficiently explain the breadth of experimental observations. A model, making minimal assumptions, is introduced that suggests two-state behavior is likely for any system with an overwhelmingly populated native state. We show two-state folding is a natural consequence of such two-state thermodynamics, and is strengthened by increasing the population of the native state. Further, the model exhibits hub-like behavior, with slow interconversions between unfolded states. Despite this, the unfolded state equilibrates quickly relative to the folding time. This apparent paradox is readily understood through this model. Finally, our results compare favorable with measurements of folding rates as a function of chain length and Keq, providing new insight into these relations.
authors.affiliation: Department of Chemistry, Stanford University, Stanford, California 94305, USA.
authors.forename: Thomas J
authors.initials: TJ
authors.lastname: Lane
authors.forename: Christian R
authors.initials: CR
authors.lastname: Schwantes
authors.forename: Kyle A
authors.initials: KA
authors.lastname: Beauchamp
authors.forename: Vijay S
authors.initials: VS
authors.lastname: Pande
mesh_terms: D007700:Kinetics; D017510:Protein Folding; D011506:Proteins / Q000737:chemistry*; D013816:Thermodynamics
chemical_list: D011506:Proteins