title: Volatile emissions from Mycobacterium avium subsp. paratuberculosis mirror bacterial growth and enable distinction of different strains.
abstract: Control of paratuberculosis in livestock is hampered by the low sensitivity of established direct and indirect diagnostic methods. Like other bacteria, Mycobacterium avium subsp. paratuberculosis (MAP) emits volatile organic compounds (VOCs). Differences of VOC patterns in breath and feces of infected and not infected animals were described in first pilot experiments but detailed information on potential marker substances is missing. This study was intended to look for characteristic volatile substances in the headspace of cultures of different MAP strains and to find out how the emission of VOCs was affected by density of bacterial growth. One laboratory adapted and four field strains, three of MAP C-type and one MAP S-type were cultivated on Herrold's egg yolk medium in dilutions of 10(-0), 10(-2), 10(-4) and 10(-6). Volatile substances were pre-concentrated from the headspace over the MAP cultures by means of Solid Phase Micro Extraction (SPME), thermally desorbed from the SPME fibers and separated and identified by means of GC-MS. Out of the large number of compounds found in the headspace over MAP cultures, 34 volatile marker substances could be identified as potential biomarkers for growth and metabolic activity. All five MAP strains could clearly be distinguished from blank culture media by means of emission patterns based on these 34 substances. In addition, patterns of volatiles emitted by the reference strain were significantly different from the field strains. Headspace concentrations of 2-ethylfuran, 2-methylfuran, 3-methylfuran, 2-pentylfuran, ethyl acetate, 1-methyl-1-H-pyrrole and dimethyldisulfide varied with density of bacterial growth. Analysis of VOCs emitted from mycobacterial cultures can be used to identify bacterial growth and, in addition, to differentiate between different bacterial strains. VOC emission patterns may be used to approximate bacterial growth density. In a perspective volatile marker substances could be used to diagnose MAP infections in animals and to identify different bacterial strains and origins.
authors.affiliation: Department of Anaesthesia and Intensive Care, University of Rostock, Rostock, Germany.
authors.forename: Phillip
authors.initials: P
authors.lastname: Trefz
authors.forename: Heike
authors.initials: H
authors.lastname: Koehler
authors.forename: Klaus
authors.initials: K
authors.lastname: Klepik
authors.forename: Petra
authors.initials: P
authors.lastname: Moebius
authors.forename: Petra
authors.initials: P
authors.lastname: Reinhold
authors.forename: Jochen K
authors.initials: JK
authors.lastname: Schubert
authors.forename: Wolfram
authors.initials: W
authors.lastname: Miekisch
mesh_terms: D000447:Aldehydes / Q000032:analysis; D000818:Animals; D002417:Cattle; D017077:Culture Media, Conditioned / Q000032:analysis / Q000737:chemistry; D003670:Deer; D005243:Feces / Q000382:microbiology*; D005663:Furans / Q000032:analysis; D008401:Gas Chromatography-Mass Spectrometry / Q000379:methods; D006838:Hydrocarbons / Q000032:analysis; D016927:Mycobacterium avium subsp. paratuberculosis / Q000145:classification / Q000235:genetics / Q000378:metabolism*; D010283:Paratuberculosis / Q000175:diagnosis / Q000382:microbiology*; D025341:Principal Component Analysis; D012680:Sensitivity and Specificity; D012756:Sheep; D013045:Species Specificity; D055549:Volatile Organic Compounds / Q000032:analysis*
chemical_list: D000447:Aldehydes; D017077:Culture Media, Conditioned; D005663:Furans; D006838:Hydrocarbons; D055549:Volatile Organic Compounds; C039851:3-methylfuran; C530101:2-pentylfuran