title: A two-step real-time PCR assay for quantitation and genotyping of human parvovirus 4.
abstract: Human parvovirus 4 (PARV4) of the family Parvoviridae was discovered in a plasma sample of a patient with an undiagnosed acute infection in 2005. Currently, three PARV4 genotypes have been identified, however, with an unknown clinical significance. Interestingly, these genotypes seem to differ in epidemiology. In Northern Europe, USA and Asia, genotypes 1 and 2 have been found to occur mainly in persons with a history of injecting drug use or other parenteral exposure. In contrast, genotype 3 appears to be endemic in sub-Saharan Africa, where it infects children and adults without such risk behaviour. In this study, a novel straightforward and cost-efficient molecular assay for both quantitation and genotyping of PARV4 DNA was developed. The two-step method first applies a single-probe pan-PARV4 qPCR for screening and quantitation of this relatively rare virus, and subsequently, only the positive samples undergo a real-time PCR-based multi-probe genotyping. The new qPCR-GT method is highly sensitive and specific regardless of the genotype, and thus being suitable for studying the clinical impact and occurrence of the different PARV4 genotypes.
authors.affiliation: Haartman Institute, Department of Virology, University of Helsinki, Helsinki, Finland. Electronic address: elina.vaisanen@helsinki.fi.
authors.forename: E
authors.initials: E
authors.lastname: Väisänen
authors.forename: A
authors.initials: A
authors.lastname: Lahtinen
authors.forename: A M
authors.initials: AM
authors.lastname: Eis-Hübinger
authors.forename: M
authors.initials: M
authors.lastname: Lappalainen
authors.forename: K
authors.initials: K
authors.lastname: Hedman
authors.forename: M
authors.initials: M
authors.lastname: Söderlund-Venermo
mesh_terms: D000328:Adult; D002648:Child; D002675:Child, Preschool; D060005:Genotyping Techniques / Q000379:methods*; D006801:Humans; D010322:Parvoviridae Infections / Q000175:diagnosis* / Q000821:virology*; D017992:Parvovirus / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D060888:Real-Time Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity; D019562:Viral Load / Q000379:methods*
keywords: Genotyping; PARV4; Parvoviridae; Quantification; Real-time PCR