title: Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water.
abstract: A Gram-stain-positive, aerobic, non-spore-forming, short-rod-shaped bacterium, designated strain MP203(T), was isolated from ice water of Midui Glacier in Tibet Autonomous Region, China. The strain was psychrotolerant, growing at 0-25 °C. 16S rRNA gene sequence analysis showed that strain MP203(T) was most similar to Frigoribacterium faeni NBRC 103066(T), Compostimonas suwonensis KACC 13354(T), Frigoribacterium mesophilum KCTC 19311(T), Marisediminicola antarctica CCTCC AB 209077(T) and Alpinimonas psychrophila JCM 18951(T), with similarities of 97.4, 97.2, 97.2, 97.1 and 97.1%, respectively. The maximum-likelihood phylogenetic tree indicated that strain MP203(T) clustered with nine genera of the family Microbacteriaceae, namely Frigoribacterium, Compostimonas, Marisediminicola, Alpinimonas, Frondihabitans, Clavibacter, Subtercola, Klugiella and Agreia. However, bootstrap analysis showed that there was no significance in the branching pattern of the linage comprising strain MP203(T) and any existing generic lineage of the family Microbacteriaceae. DNA-DNA hybridization results indicated levels of relatedness between strain MP203(T) and Marisediminicola antarctica CCTCC AB 209077(T), Frigoribacterium faeni NBRC 103066(T), Frigoribacterium mesophilum KCTC 19311(T), Compostimonas suwonensis KACC 13354(T) and Alpinimonas psychrophila JCM 18951(T) were 25.8 ± 7.3, 29.6 ± 7.6, 19.7 ± 6.7, 16.0 ± 4.2 and 12.4 ± 5.1 % (mean ± SD), respectively. The G+C content of the genomic DNA was 64.1 mol%. Analysis of the cell-wall peptidoglycan revealed that the peptidoglycan structure of strain MP203(T) was B10 type with Gly[l-Hse]-D-Glu-D-DAB, containing 2, 4-diaminobutyric acid (DAB) as a diagnostic amino acid. The cell-wall sugars were rhamnose, ribose, mannose and glucose. The major fatty acids were anteiso-C(15 : 0), iso-C(16 : 0) and anteiso A-C(15 : 1). An unusual compound identified as anteiso-C(15 : 0)-DMA (1,1-dimethoxy-anteiso-pentadecane) was also present in strain MP203(T). The predominant menaquinone was MK-10. Diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), one unknown glycolipid and four unknown lipids were detected in the polar lipid extracts. As strain MP203(T) was distinguishable from phylogenetically related genera in the family Microbacteriaceae in terms of its physiological and chemotaxonomic characteristics and phylogenetic position, it was considered to represent a novel species of a new genus. Thus, the name Glaciihabitans tibetensis gen. nov., sp. nov. is proposed. The type strain of Glaciihabitans tibetensis is MP203(T) ( = CGMCC 1.12484(T) = KCTC 29148(T)).
authors.affiliation: China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, PR China.
authors.forename: Ai-Hua
authors.initials: AH
authors.lastname: Li
authors.affiliation: China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, PR China.
authors.forename: Hong-Can
authors.initials: HC
authors.lastname: Liu
authors.affiliation: China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, PR China.
authors.forename: Yu-Hua
authors.initials: YH
authors.lastname: Xin
authors.affiliation: Biological Resource Center/KCTC, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea.
authors.forename: Song-Gun
authors.initials: SG
authors.lastname: Kim
authors.affiliation: China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, PR China.
authors.forename: Yu-Guang
authors.initials: YG
authors.lastname: Zhou
mesh_terms: D000192:Actinomycetales / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D015373:Bacterial Typing Techniques; D001482:Base Composition; D004269:DNA, Bacterial / Q000235:genetics; D005227:Fatty Acids / Q000737:chemistry; D046448:Ice Cover / Q000382:microbiology; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D010457:Peptidoglycan / Q000737:chemistry; D010715:Phosphatidylglycerols / Q000737:chemistry; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D018609:Tibet; D014451:Ubiquinone / Q000737:chemistry; D014871:Water Microbiology
chemical_list: D004269:DNA, Bacterial; D005227:Fatty Acids; D010457:Peptidoglycan; D010715:Phosphatidylglycerols; D012336:RNA, Ribosomal, 16S; D014451:Ubiquinone; C025204:Ubiquinone Q2