title: Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium.
abstract: Pyrosequencing of the bacterial community associated with a cosmopolitan marine diatom during enrichment with crude oil revealed several Arenibacter phylotypes, of which one (OTU-202) had become significantly enriched by the oil. Since members of the genus Arenibacter have not been previously shown to degrade hydrocarbons, we attempted to isolate a representative strain of this genus in order to directly investigate its hydrocarbon-degrading potential. Based on 16S rRNA sequencing, one isolate (designated strain TG409(T)) exhibited >99% sequence identity to three type strains of this genus. On the basis of phenotypic and genotypic characteristics, strain TG409(T) represents a novel species in the genus Arenibacter, for which the name Arenibacter algicola sp. nov. is proposed. We reveal for the first time that polycyclic aromatic hydrocarbon (PAH) degradation is a shared phenotype among members of this genus, indicating that it could be used as a taxonomic marker for this genus. Kinetic data for PAH mineralization rates showed that naphthalene was preferred to phenanthrene, and its mineralization was significantly enhanced in the presence of glass wool (a surrogate for diatom cell surfaces). During enrichment on hydrocarbons, strain TG409(T) emulsified n-tetradecane and crude oil, and cells were found to be preferentially attached to oil droplets, indicating an ability by the strain to express cell surface amphiphilic substances (biosurfactants or bioemulsifiers) as a possible strategy to increase the bioavailability of hydrocarbons. This work adds to our growing knowledge on the diversity of bacterial genera in the ocean contributing to the degradation of oil contaminants and of hydrocarbon-degrading bacteria found living in association with marine eukaryotic phytoplankton.
authors.affiliation: Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, North Carolina, USA.
authors.forename: Tony
authors.initials: T
authors.lastname: Gutierrez
authors.forename: Glenn
authors.initials: G
authors.lastname: Rhodes
authors.forename: Sara
authors.initials: S
authors.lastname: Mishamandani
authors.forename: David
authors.initials: D
authors.lastname: Berry
authors.forename: William B
authors.initials: WB
authors.lastname: Whitman
authors.forename: Peter D
authors.initials: PD
authors.lastname: Nichols
authors.forename: Kirk T
authors.initials: KT
authors.lastname: Semple
authors.forename: Michael D
authors.initials: MD
authors.lastname: Aitken
mesh_terms: D000473:Alkanes / Q000378:metabolism; D001673:Biodegradation, Environmental; D005227:Fatty Acids / Q000032:analysis / Q000737:chemistry; D041965:Flavobacteriaceae / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D008969:Molecular Sequence Data; D009281:Naphthalenes / Q000378:metabolism; D010578:Petroleum / Q000378:metabolism; D010616:Phenanthrenes / Q000378:metabolism; D010802:Phylogeny; D010839:Phytoplankton / Q000382:microbiology*; D011084:Polycyclic Aromatic Hydrocarbons / Q000378:metabolism*; D012336:RNA, Ribosomal, 16S; D014874:Water Pollutants, Chemical / Q000378:metabolism*
chemical_list: D000473:Alkanes; D005227:Fatty Acids; D009281:Naphthalenes; D010578:Petroleum; D010616:Phenanthrenes; D011084:Polycyclic Aromatic Hydrocarbons; D012336:RNA, Ribosomal, 16S; D014874:Water Pollutants, Chemical; C024713:n-tetradecane; C031721:naphthalene; C031181:phenanthrene