title: The AP2-like gene OitaAP2 is alternatively spliced and differentially expressed in inflorescence and vegetative tissues of the orchid Orchis italica.
abstract: The AP2/ERF proteins are plant-specific transcription factors involved in multiple regulatory pathways, from plant organ development to response to various environmental stresses. One of the mechanisms that regulates the AP2-like genes involves the microRNA miR172, which controls their activity at the post-transcriptional level. Extensive studies on AP2-like genes are available in many different species; however, in orchids, one of the largest plant families, studies are restricted to a few species, all belonging to the Epidendroideae subfamily. In the present study, we report the isolation of an AP2-like gene in the Mediterranean orchid Orchis italica (Orchidoideae). The OitaAP2 locus includes 10 exons and 9 introns, and its transcript is alternatively spliced, resulting in the long OitaAP2 and the short OitaAP2_ISO isoforms, with the latter skipping exon 9. Both isoforms contain the conserved target site for miR172, whose action is demonstrated by the presence of cleaved OitaAP2 mRNA. The OitaAP2 and OitaAP2_ISO mRNAs are present in the tepals and lip before and after anthesis at different expression levels. In addition, the OitaAP2_ISO isoform is expressed in the ovary before pollination and in the root and stem. The isoform-specific expression pattern suggests a functional differentiation of the OitaAP2 alternatively spliced transcripts. The expression profile of miR172 is complementary to that of the OitaAP2 isoforms in inflorescence tissues before anthesis, whereas after anthesis and in ovary tissue before and after pollination, this relationship disappears, suggesting the existence of OitaAP2 inhibitory mechanisms in these tissues that differ from that involving miR172.
authors.affiliation: Department of Biology, University of Naples Federico II, Napoli, Italy.
authors.forename: Marinella
authors.initials: M
authors.lastname: Salemme
authors.forename: Maria
authors.initials: M
authors.lastname: Sica
authors.forename: Giovanni
authors.initials: G
authors.lastname: Iazzetti
authors.forename: Luciano
authors.initials: L
authors.lastname: Gaudio
authors.forename: Serena
authors.initials: S
authors.lastname: Aceto
mesh_terms: D017398:Alternative Splicing; D000595:Amino Acid Sequence; D005091:Exons; D018506:Gene Expression Regulation, Plant; D056426:Genetic Loci; D018745:Genome, Plant; D056626:Inflorescence / Q000235:genetics* / Q000378:metabolism; D007438:Introns; D035683:MicroRNAs / Q000235:genetics / Q000378:metabolism; D008969:Molecular Sequence Data; D029595:Orchidaceae / Q000235:genetics* / Q000378:metabolism; D010802:Phylogeny; D010940:Plant Proteins / Q000235:genetics* / Q000378:metabolism; D018517:Plant Roots / Q000235:genetics / Q000378:metabolism; D018547:Plant Stems / Q000235:genetics / Q000378:metabolism; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism; D016415:Sequence Alignment; D015398:Signal Transduction; D014157:Transcription Factors / Q000145:classification / Q000235:genetics* / Q000378:metabolism
chemical_list: D035683:MicroRNAs; D010940:Plant Proteins; D012333:RNA, Messenger; D014157:Transcription Factors