title: Synthesis and evaluation of stability of m3G-CAP analogues in serum-supplemented medium and cytosolic extract.
abstract: Increased efficiency in splice-correction (splice-switching) has been shown by use of a synthetic RNA 5'-end nuclear localization signal composed of an m3G-CAP. Use of the m3G-CAP as an NLS signal for therapeutic compounds in vivo is likely to require additional stability towards enzymatic degradation. For this reason introduction of stabilizing modifications into the triphosphate bridge may be beneficial. Here we report on synthesis of three m3G-CAP derivatives with a 'native' (m3GpppAOMe) as well as with a methylenephosphonate stabilized triphosphate bridge (m3GpCH2ppAOMe, m3GppCH2pAOMe) and the investigation of the enzymatic stability of these compounds in 10% (v/v) fetal bovine serum (FBS) and cytosolic extract from HeLa cells, thus mimicking in vivo conditions. Our results indicate that introduction of methylene group between the β and γ phosphates in m3GpCH2ppAOMe improves to some extent stability of this analogue in 10% serum but does not prolong life of this compound in the cytosolic extract. In contrast the stabilization introduced between α and β phosphates in m3GppCH2pAOMe offers threefold longer life in 10% serum and almost complete protection in cytosolic extract.
authors.affiliation: Department of Biosciences and Nutrition, Karolinska Institutet, Novum, SE-14183 Huddinge, Sweden. Electronic address: Malgorzata.Honcharenko@ki.se.
authors.forename: Malgorzata
authors.initials: M
authors.lastname: Honcharenko
authors.forename: Malgorzata
authors.initials: M
authors.lastname: Zytek
authors.forename: Burcu
authors.initials: B
authors.lastname: Bestas
authors.forename: Pedro
authors.initials: P
authors.lastname: Moreno
authors.forename: Jacek
authors.initials: J
authors.lastname: Jemielity
authors.forename: Edward
authors.initials: E
authors.lastname: Darzynkiewicz
authors.forename: C I Edvard
authors.initials: CI
authors.lastname: Smith
authors.forename: Roger
authors.initials: R
authors.lastname: Strömberg
mesh_terms: D000818:Animals; D002417:Cattle; D002457:Cell Extracts / Q000737:chemistry*; D003470:Culture Media / Q000737:chemistry*; D003600:Cytosol / Q000737:chemistry*; D006367:HeLa Cells; D006801:Humans; D009690:Nucleic Acid Conformation; D012315:RNA Caps / Q000138:chemical synthesis / Q000737:chemistry* / Q000378:metabolism*
chemical_list: D002457:Cell Extracts; D003470:Culture Media; D012315:RNA Caps
keywords: Cytosolic extract; Enzymatic stability; Nuclear localization; m(3)G-CAP