ICO amplicon NGS data analysis: a Web tool for variant detection in common high-risk hereditary cancer genes analyzed by amplicon GS Junior next-generation sequencing.
Next-generation sequencing (NGS) has revolutionized genomic research and is set to have a major impact on genetic diagnostics thanks to the advent of benchtop sequencers and flexible kits for targeted libraries. Among the main hurdles in NGS are the difficulty of performing bioinformatic analysis of the huge volume of data generated and the high number of false positive calls that could be obtained, depending on the NGS technology and the analysis pipeline. Here, we present the development of a free and user-friendly Web data analysis tool that detects and filters sequence variants, provides coverage information, and allows the user to customize some basic parameters. The tool has been developed to provide accurate genetic analysis of targeted sequencing of common high-risk hereditary cancer genes using amplicon libraries run in a GS Junior System. The Web resource is linked to our own mutation database, to assist in the clinical classification of identified variants. We believe that this tool will greatly facilitate the use of the NGS approach in routine laboratories.
Adriana
A
Lopez-Doriga
Lídia
L
Feliubadaló
Mireia
M
Menéndez
Sergio
S
Lopez-Doriga
Francisco D
FD
Morón-Duran
Jesús
J
del Valle
Eva
E
Tornero
Eva
E
Montes
Raquel
R
Cuesta
Olga
O
Campos
Carolina
C
Gómez
Marta
M
Pineda
Sara
S
González
Victor
V
Moreno
Gabriel
G
Capellá
Conxi
C
Lázaro
D019295:Computational Biology / Q000379:methods*; D052138:Genes, Neoplasm; D005820:Genetic Testing / Q000379:methods*; D015894:Genome, Human; D023281:Genomics / Q000379:methods; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods*; D006801:Humans; D020407:Internet; D014584:User-Computer Interface