AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations.
BACKGROUND
The plethora of information that emerges from large-scale genome characterization studies has triggered the development of computational frameworks and tools for efficient analysis, interpretation and visualization of genomic data. Functional annotation of genomic variations and the ability to visualize the data in the context of whole genome and/or multiple genomes has remained a challenging task. We have developed an interactive web-based tool, AVIA (Annotation, Visualization and Impact Analysis), to explore and interpret large sets of genomic variations (single nucleotide variations and insertion/deletions) and to help guide and summarize genomic experiments. The annotation, summary plots and tables are packaged and can be downloaded by the user from the email link provided.


METHODS
http://avia.abcc.ncifcrf.gov.
Advanced Biomedical Computing Center (ABCC), Information Systems Program, SAIC-Frederick Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Hue
H
Vuong
Robert M
RM
Stephens
Natalia
N
Volfovsky
D017353:Gene Deletion; D016678:Genome; D023281:Genomics / Q000379:methods*; D020407:Internet; D016254:Mutagenesis, Insertional; D020641:Polymorphism, Single Nucleotide; D012984:Software