TGIF1 is a potential candidate gene for high myopia in ethnic Kashmiri population.
OBJECTIVE
High myopia is a complex disorder that imposes serious consequences on ocular health. Linkage analysis has identified several genetic loci with a series of potential candidate genes that reveal an ambiguous pattern of association with high myopia due to population heterogeneity. We have accordingly chosen to examine the prospect of association of one such gene [transforming growth β-induced factor 1 (TGIF1)] in population that is purely ethnic (Kashmiri) and represents a homogeneous cohort from Northern India.


METHODS
Cases with high myopia with a spherical equivalent of ≥-6 diopters (D) and emmetropic controls with spherical equivalent within ±0.5 D in one or both eyes represented by a sample size of 212 ethnic Kashmiri subjects and 239 matched controls. Genomic DNA was genotyped for sequence variations in TGIF1 gene and allele frequencies tested for Hardy-Weinberg disequilibrium. Potential association was evaluated using χ(2) or Fisher's exact test.


RESULTS
Two previously reported missense variations C > T, rs4468717 (first base of codon 143) changing proline to serine and rs2229333 (second base of codon 143) changing proline to leucine were identified in exon 10 of TGIF1. Both variations exhibited possibly significant (p < 0.05) association with the disease phenotype. Since the variant allele frequency of both the single-nucleotide polymorphisms in cases is higher than controls with odds ratio greater than 1.Therefore, variant allele of both the single-nucleotide polymorphisms represents the possible risk factor for myopia in the Kashmiri population. In silico predictions show that substitutions are likely to have an impact on the structure and functional properties of the protein, making it imperative to understand their functional consequences in relation to high myopia.


CONCLUSIONS
TGIF1 is a relevant candidate gene with potential to contribute in the genesis of high myopia.
Department of Biotechnology .
Ishfaq
I
Ahmed
Shabhat
S
Rasool
Tariq
T
Jan
Tariq
T
Qureshi
Niyaz A
NA
Naykoo
Khurshid I
KI
Andrabi
D000293:Adolescent; D000328:Adult; D000368:Aged; D002648:Child; D005006:Ethnicity / Q000235:genetics* / Q000706:statistics & numerical data*; D005260:Female; D005787:Gene Frequency; D008040:Genetic Linkage; D020022:Genetic Predisposition to Disease / Q000208:ethnology / Q000235:genetics; D005838:Genotype; D018398:Homeodomain Proteins / Q000235:genetics*; D006801:Humans; D007194:India / Q000453:epidemiology; D008297:Male; D008875:Middle Aged; D009216:Myopia / Q000208:ethnology* / Q000235:genetics*; D020641:Polymorphism, Single Nucleotide; D012097:Repressor Proteins / Q000235:genetics*; D012720:Severity of Illness Index; D055815:Young Adult
D018398:Homeodomain Proteins; D012097:Repressor Proteins; C097504:TGIF1 protein, human