The Genome Database for Rosaceae (GDR): year 10 update.
The Genome Database for Rosaceae (GDR, http:/www.rosaceae.org), the long-standing central repository and data mining resource for Rosaceae research, has been enhanced with new genomic, genetic and breeding data, and improved functionality. Whole genome sequences of apple, peach and strawberry are available to browse or download with a range of annotations, including gene model predictions, aligned transcripts, repetitive elements, polymorphisms, mapped genetic markers, mapped NCBI Rosaceae genes, gene homologs and association of InterPro protein domains, GO terms and Kyoto Encyclopedia of Genes and Genomes pathway terms. Annotated sequences can be queried using search interfaces and visualized using GBrowse. New expressed sequence tag unigene sets are available for major genera, and Pathway data are available through FragariaCyc, AppleCyc and PeachCyc databases. Synteny among the three sequenced genomes can be viewed using GBrowse_Syn. New markers, genetic maps and extensively curated qualitative/Mendelian and quantitative trait loci are available. Phenotype and genotype data from breeding projects and genetic diversity projects are also included. Improved search pages are available for marker, trait locus, genetic diversity and publication data. New search tools for breeders enable selection comparison and assistance with breeding decision making.
Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USA, Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA, Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA, Department of Computer Science, Saginaw Valley State University, University Center, MI 48710, USA and Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA.
Sook
S
Jung
Stephen P
SP
Ficklin
Taein
T
Lee
Chun-Huai
CH
Cheng
Anna
A
Blenda
Ping
P
Zheng
Jing
J
Yu
Aureliano
A
Bombarely
Ilhyung
I
Cho
Sushan
S
Ru
Kate
K
Evans
Cameron
C
Peace
Albert G
AG
Abbott
Lukas A
LA
Mueller
Mercy A
MA
Olmstead
Dorrie
D
Main
D001947:Breeding; D030541:Databases, Genetic; D017343:Genes, Plant; D005819:Genetic Markers; D014644:Genetic Variation; D018745:Genome, Plant; D023281:Genomics; D020407:Internet; D040641:Quantitative Trait Loci; D027824:Rosaceae / Q000235:genetics*
D005819:Genetic Markers