title: Assessment of Microbial Richness in Pelagic Sediment of Andaman Sea by Bacterial Tag Encoded FLX Titanium Amplicon Pyrosequencing (bTEFAP).
abstract: Microbial diversity of 1,000 m deep pelagic sediment from off Coast of Andaman Sea was analyzed by a culture independent technique, bacterial tag encoded FLX titanium amplicon pyrosequencing. The hypervariable region of small subunit ribosomal rRNA gene covering V6-V9, was amplified from the metagenomic DNA and sequenced. We obtained 19,271 reads, of which 18,206 high quality sequences were subjected to diversity analysis. A total of 305 operational taxonomic units (OTUs) were obtained corresponding to the members of firmicutes, proteobacteria, plantomycetes, actinobacteria, chloroflexi, bacteroidetes, and verucomicrobium. Firmicutes was the predominant phylum, which was largely represented with the family bacillaceae. More than 44 % of sequence reads could not be classified up to the species level and more than 14 % of the reads could not be assigned to any genus. Thus, the data indicates the possibility for the presence of uncultivable or unidentified novel bacterial species. In addition, the community structure identified in this study significantly differs with other reports from marine sediments.
authors.affiliation: Department of Biotechnology, School of Life Sciences, Pondicherry University, Pondicherry, 605014 India.
authors.forename: Balakrishnan
authors.initials: B
authors.lastname: Sundarakrishnan
authors.forename: Muthuirulan
authors.initials: M
authors.lastname: Pushpanathan
authors.forename: Sathyanarayanan
authors.initials: S
authors.lastname: Jayashree
authors.forename: Jeyaprakash
authors.initials: J
authors.lastname: Rajendhran
authors.forename: Natarajan
authors.initials: N
authors.lastname: Sakthivel
authors.forename: Seetharaman
authors.initials: S
authors.lastname: Jayachandran
authors.forename: Paramasamy
authors.initials: P
authors.lastname: Gunasekaran
keywords: 16S rRNA; Andaman Sea; Metagenomics; Microbial richness; Pyrosequencing