title: Genetic networks involved in poplar root response to low nitrogen.
abstract: Perception of environmental cues and adaptation to changing environmental conditions are crucial for survival of sessile organisms like plants. This is even more important for woody perennial species like trees that can occupy a site for thousands of years. We have previously shown that under low nitrogen (LN), poplar trees display a vigorous and long-lasting root growth associated with global transcriptomic reprogramming and an activation of hierarchical genetic networks. Here we use computational analysis to better understand the network among the genes showing distinct chronological patterns of expression during the response. Our analyses confirm the previous findings, define new potential signaling pathways and the possible downstream targets of these signaling events.
authors.affiliation: School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, MI USA; Biotechnology Research Center; Michigan Technological University; Houghton, MI USA; Department of Mathematics; Michigan Technological University; Houghton, MI USA.
authors.forename: Hairong
authors.initials: H
authors.lastname: Wei
authors.affiliation: School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, MI USA.
authors.forename: Yordan
authors.initials: Y
authors.lastname: Yordanov
authors.affiliation: Department of Mathematics; Michigan Technological University; Houghton, MI USA.
authors.forename: Sapna
authors.initials: S
authors.lastname: Kumari
authors.affiliation: School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, MI USA.
authors.forename: Tatyana
authors.initials: T
authors.lastname: Georgieva
authors.affiliation: Biotechnology Research Center; Michigan Technological University; Houghton, MI USA.
authors.forename: Victor
authors.initials: V
authors.lastname: Busov
mesh_terms: D053263:Gene Regulatory Networks; D009584:Nitrogen / Q000494:pharmacology*; D018517:Plant Roots / Q000187:drug effects* / Q000235:genetics* / Q000254:growth & development; D032107:Populus / Q000187:drug effects* / Q000235:genetics* / Q000254:growth & development; D015398:Signal Transduction / Q000187:drug effects / Q000235:genetics
chemical_list: D009584:Nitrogen
keywords: Signal transduction; biological processes; low nitrogen; root specific growth; transcription factors