title: Structure and properties of the C-terminal β-helical domain of VgrG protein from Escherichia coli O157.
abstract: The bacterial Type 6 secretion system (T6SS) translocates protein toxins (also called effectors) from the cytosol of a T6SS-carrying cell to a target cell by a syringe-like supramolecular complex resembling a contractile tail of bacteriophages. Valine-glycine repeat protein G (VgrG) proteins, which are the homologues of the gp27-gp5 (gene product) cell puncturing complex of bacteriophage T4, are considered to be located at the attacking tip of the bacterial T6SS apparatus. Here, we over-expressed six VgrG proteins from pathogenic Escherichia coli O157 and CFT073 strains. Purified VgrG1 of E. coli O157 and c3393 of E. coli CFT073 form trimer in solution and are rich in β-structure. We also solved the crystal structure of a trypsin-resistant C-terminal fragment of E. coli O157 VgrG1 (VgrG1C(G561)) at 1.95 Å resolution. VgrG1C(G561) forms a three-stranded antiparallel β-helix which is structurally similar to the β-helix domain of the central spike protein (gp138) of phi92 phage, indicating a possible evolutional relationship. Comparison of four different three-stranded β-helix proteins shows how their amino acid composition determines the protein fold.
authors.affiliation: Department of Bioengineering, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-B9 Nagatsuta-cho, Midori-ku, Yokohama 226-8501 Japan; and École Polytechnique Fédérale de Lausanne (EPFL), Laboratory of Structural Biology and Biophysics, BSP-415, CH-1015 Lausanne, Switzerland.
authors.forename: Kazuya
authors.initials: K
authors.lastname: Uchida
authors.forename: Petr G
authors.initials: PG
authors.lastname: Leiman
authors.forename: Fumio
authors.initials: F
authors.lastname: Arisaka
authors.forename: Shuji
authors.initials: S
authors.lastname: Kanamaru
mesh_terms: D000595:Amino Acid Sequence; D018360:Crystallography, X-Ray; D019453:Escherichia coli O157 / Q000302:isolation & purification / Q000378:metabolism*; D029968:Escherichia coli Proteins / Q000737:chemistry* / Q000378:metabolism*; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008969:Molecular Sequence Data; D055503:Protein Multimerization; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary; D059748:Proteolysis; D012492:Salts / Q000378:metabolism; D012996:Solutions; D013329:Structure-Activity Relationship; D014357:Trypsin / Q000378:metabolism
chemical_list: D029968:Escherichia coli Proteins; D012492:Salts; D012996:Solutions; D014357:Trypsin
keywords: Type 6 secretion system; X-ray crystallography; bacteria; structure; three-stranded β-helix