title: Domain landscapes of somatic mutations in cancer.
abstract: The fight against cancer has been hindered by its highly heterogeneous nature. Recent genome-wide sequencing studies have shown that individual malignancies contain many mutations that range from those commonly found in tumor genomes to rare cancer somatic mutations present only in a small fraction of lesions. For instance, the genome of a colorectal cancer in one patient can have somewhere between 50 to 100 somatic mutations, but might share only 2 or 3 mutated genes with colorectal tumor genomes from other patients. Somatic mutations that are frequently found in tumor genomes often play a significant role in tumor development and are thus classified as cancer driver mutations. However, efforts to correlate somatic mutations found in one or few individual tumor genomes with critical functional roles in tumor development have so far been unsuccessful. In this paper, we analyze cancer somatic mutations from lung and other types of cancer patients using a new approach based on aggregation of mutational data at the protein domain level. Our preliminary analysis confirms that our approach creates a framework for leveraging structural genomics and evolution into the analysis of somatic cancer mutations. We found that by incorporating information about classification of proteins and protein sites we are able to detect novel clusters of cancer somatic mutations.
authors.affiliation: University of Maryland, Baltimore County, Baltimore, MD.
authors.forename: Thomas A
authors.initials: TA
authors.lastname: Peterson
authors.forename: Dohwan
authors.initials: D
authors.lastname: Park
authors.forename: Maricel G
authors.initials: MG
authors.lastname: Kann