title: The paradox of marine heterotrophic nitrogen fixation: abundances of heterotrophic diazotrophs do not account for nitrogen fixation rates in the Eastern Tropical South Pacific.
abstract: Results of recent modelling efforts imply denitrification-influenced waters, such as those in the Eastern Tropical South Pacific (ETSP), may support high rates of biological nitrogen fixation (BNF), yet little is known about the N2 -fixing microbial community in this region. Our characterization of the ETSP diazotrophic community along a gradient from upwelling-influenced to oligotrophic waters did not detect cyanobacterial diazotrophs commonly found in other open ocean regions. Most of the nifH genes amplified by polymerase chain reaction (PCR) from DNA and RNA samples clustered with γ-proteobacterial nifH sequences, although a novel Trichodesmium phylotype was also recovered. Three quantitative PCR assays were developed to target γ-proteobacterial phylotypes, but all were found to be present at low abundances. An analysis of the expected BNF rates based on abundances and plausible cell-specific N2 fixation rates indicates that these γ-proteobacteria are unlikely to be responsible for previously reported BNF rates from corresponding samples. Therefore, the organisms responsible for the measured BNF rates remain poorly understood. Furthermore, there is little direct evidence, at this time, to support the hypothesis that heterotrophic N2 fixation contributes significantly to oceanic BNF rates based on our analysis of heterotrophic cell-specific N2 fixation rates required to explain BNF rates reported in previously published studies.
authors.affiliation: Ocean Sciences Department, University of California, Santa Cruz, CA, USA.
authors.forename: Kendra A
authors.initials: KA
authors.lastname: Turk-Kubo
authors.forename: Muskan
authors.initials: M
authors.lastname: Karamchandani
authors.forename: Douglas G
authors.initials: DG
authors.lastname: Capone
authors.forename: Jonathan P
authors.initials: JP
authors.lastname: Zehr
mesh_terms: D000458:Cyanobacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D020563:Gammaproteobacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D052836:Heterotrophic Processes; D009586:Nitrogen Fixation / Q000235:genetics; D009792:Oceans and Seas; D010088:Oxidoreductases / Q000235:genetics / Q000378:metabolism; D010802:Phylogeny; D012623:Seawater / Q000382:microbiology*
chemical_list: D010088:Oxidoreductases; C029130:nitrogenase reductase