title: Rates of transposition in Escherichia coli.
abstract: The evolutionary role of transposable elements (TEs) is still highly controversial. Two key parameters, the transposition rate (u and w, for replicative and non-replicative transposition) and the excision rate (e) are fundamental to understanding their evolution and maintenance in populations. We have estimated u, w and e for six families of TEs (including eight members: IS1, IS2, IS3, IS4, IS5, IS30, IS150 and IS186) in Escherichia coli, using a mutation accumulation (MA) experiment. In this experiment, mutations accumulate essentially at the rate at which they appear, during a period of 80 500 (1610 generations × 50 lines) generations, and spontaneous transposition events can be detected. This differs from other experiments in which insertions accumulated under strong selective pressure or over a limited genomic target. We therefore provide new estimates for the spontaneous rates of transposition and excision in E. coli. We observed 25 transposition and three excision events in 50 MA lines, leading to overall rate estimates of u ∼ 1.15 × 10(-5), w ∼ 4 × 10(-8) and e ∼ 1.08 × 10(-6) (per element, per generation). Furthermore, extensive variation between elements was found, consistent with previous knowledge of the mechanisms and regulation of transposition for the different elements.
authors.affiliation: Instituto Gulbenkian de Ciência, , Oeiras, Portugal.
authors.forename: Ana
authors.initials: A
authors.lastname: Sousa
authors.forename: Catarina
authors.initials: C
authors.lastname: Bourgard
authors.forename: Lindi M
authors.initials: LM
authors.lastname: Wahl
authors.forename: Isabel
authors.initials: I
authors.lastname: Gordo
mesh_terms: D002874:Chromosome Mapping; D004251:DNA Transposable Elements / Q000235:genetics*; D004926:Escherichia coli / Q000235:genetics*; D017353:Gene Deletion; D015964:Gene Expression Regulation, Bacterial; D005798:Genes, Bacterial; D023281:Genomics; D008957:Models, Genetic; D009154:Mutation; D016133:Polymerase Chain Reaction; D017422:Sequence Analysis, DNA
chemical_list: D004251:DNA Transposable Elements
keywords: Escherichia coli; insertion sequences; mutation accumulation; rate of transposition; transposable elements