title: Single molecule study of DNA collision with elliptical nanoposts conveyed by hydrodynamics.
abstract: Periodic arrays of micro- or nanopillars constitute solid-state matrices with excellent properties for DNA size separation. Nanofabrication technologies offer many solutions to tailor the geometry of obstacle arrays, yet most studies have been conducted with cylinders arranged in hexagonal lattices. In this report, we investigate the dynamics of single DNA collision with elliptical nanoposts using hydrodynamic actuation. Our data show that the asymmetry of the obstacles has minor effect on unhooking dynamics, and thus confirm recent predictions obtained by Brownian dynamics simulations. In addition, we show that the disengagement dynamics are correctly predicted by models of electrophoresis, and propose that this consistency is associated to the confinement in slit-like channels. We finally conclude that elliptical posts are expected to marginally improve the performances of separation devices.
authors: CNRS, LAAS, Toulouse, France; Université de Toulouse, LAAS, Toulouse, France.
authors: Yannick
authors: Y
authors: Viero
authors: Qihao
authors: Q
authors: He
authors: Marc
authors: M
authors: Fouet
authors: Aurélien
authors: A
authors: Bancaud
mesh_terms: D004247:DNA / Q000737:chemistry / Q000302:isolation & purification*; D057446:Hydrodynamics; D056004:Molecular Dynamics Simulation; D049329:Nanostructures / Q000737:chemistry / Q000648:ultrastructure*; D036103:Nanotechnology / Q000295:instrumentation* / Q000379:methods
chemical_list: D004247:DNA
keywords: DNA separation; DNA-obstacle collision; Elliptical nanopost; Hydrodynamic actuation; Nanopost arrays