title: Evaluation of a global algorithm for wavefront reconstruction for Shack-Hartmann wave-front sensors and thick fundus reflectors.
abstract: OBJECTIVE
  Conventional aberration analysis by a Shack-Hartmann aberrometer is based on the implicit assumption that an injected probe beam reflects from a single fundus layer. In fact, the biological fundus is a thick reflector and therefore conventional analysis may produce errors of unknown magnitude. We developed a novel computational method to investigate this potential failure of conventional analysis.
  
  
  METHODS
  The Shack-Hartmann wavefront sensor was simulated by computer software and used to recover by two methods the known wavefront aberrations expected from a population of normally-aberrated human eyes and bi-layer fundus reflection. The conventional method determines the centroid of each spot in the SH data image, from which wavefront slopes are computed for least-squares fitting with derivatives of Zernike polynomials. The novel 'global' method iteratively adjusted the aberration coefficients derived from conventional centroid analysis until the SH image, when treated as a unitary picture, optimally matched the original data image.
  
  
  RESULTS
  Both methods recovered higher order aberrations accurately and precisely, but only the global algorithm correctly recovered the defocus coefficients associated with each layer of fundus reflection. The global algorithm accurately recovered Zernike coefficients for mean defocus and bi-layer separation with maximum error <0.1%. The global algorithm was robust for bi-layer separation up to 2 dioptres for a typical SH wavefront sensor design. For 100 randomly generated test wavefronts with 0.7 D axial separation, the retrieved mean axial separation was 0.70 D with standard deviations (S.D.) of 0.002 D.
  
  
  CONCLUSIONS
  Sufficient information is contained in SH data images to measure the dioptric thickness of dual-layer fundus reflection. The global algorithm is superior since it successfully recovered the focus value associated with both fundus layers even when their separation was too small to produce clearly separated spots, while the conventional analysis misrepresents the defocus component of the wavefront aberration as the mean defocus for the two reflectors. Our novel global algorithm is a promising method for SH data image analysis in clinical and visual optics research for human and animal eyes.
authors: School of Optometry, Indiana University, Bloomington, USA.
authors: Tao
authors: T
authors: Liu
authors: Larry
authors: L
authors: Thibos
authors: Gildas
authors: G
authors: Marin
authors: Martha
authors: M
authors: Hernandez
mesh_terms: D000465:Algorithms; D019781:Corneal Topography / Q000295:instrumentation*; D057108:Corneal Wavefront Aberration / Q000175:diagnosis*; D019544:Equipment Failure Analysis; D006801:Humans; D008954:Models, Biological
keywords: Shack-Hartmann wavefront sensors; centroid analysis; global wavefront reconstruction; thick fundal reflectors