title: Evolutionary advantage via common action of recombination and neutrality.
abstract: We investigate evolution models with recombination and neutrality. We consider the Crow-Kimura (parallel) mutation-selection model with the neutral fitness landscape, in which there is a central peak with high fitness A, and some of 1-point mutants have the same high fitness A, while the fitness of other sequences is 0. We find that the effect of recombination and neutrality depends on the concrete version of both neutrality and recombination. We consider three versions of neutrality: (a) all the nearest neighbor sequences of the peak sequence have the same high fitness A; (b) all the l-point mutations in a piece of genome of length l≥1 are neutral; (c) the neutral sequences are randomly distributed among the nearest neighbors of the peak sequences. We also consider three versions of recombination: (I) the simple horizontal gene transfer (HGT) of one nucleotide; (II) the exchange of a piece of genome of length l, HGT-l; (III) two-point crossover recombination (2CR). For the case of (a), the 2CR gives a rather strong contribution to the mean fitness, much stronger than that of HGT for a large genome length L. For the random distribution of neutral sequences there is a critical degree of neutrality ν(c), and for μ<μ(c) and (μ(c)-μ) is not large, the 2CR suppresses the mean fitness while HGT increases it; for ν much larger than ν(c), the 2CR and HGT-l increase the mean fitness larger than that of the HGT. We also consider the recombination in the case of smooth fitness landscapes. The recombination gives some advantage in the evolutionary dynamics, where recombination distinguishes clearly the mean-field-like evolutionary factors from the fluctuation-like ones. By contrast, mutations affect the mean-field-like and fluctuation-like factors similarly. Consequently, recombination can accelerate the non-mean-field (fluctuation) type dynamics without considerably affecting the mean-field-like factors.
authors: Institute of Physics, Academia Sinica, Nankang, Taipei 11529, Taiwan and A. I. Alikhanyan National Science Laboratory (Yerevan Physics Institute) Foundation, 2 Alikhanian Brothers Street, Yerevan 375036, Armenia and Physics Division of National Center for Theoretical Sciences Taipei Branch, National Taiwan University, Taipei, Taiwan.
authors: David B
authors: DB
authors: Saakian
authors: Institute of Physics, Academia Sinica, Nankang, Taipei 11529, Taiwan.
authors: Chin-Kun
authors: CK
authors: Hu
mesh_terms: D019143:Evolution, Molecular; D006678:HIV / Q000235:genetics / Q000502:physiology; D008957:Models, Genetic; D011995:Recombination, Genetic; D012641:Selection, Genetic