title: Manual selection of spontaneous activity maps derived from independent component analysis: criteria and inter-rater reliability study.
abstract: BACKGROUND
  During the last years, many investigations focused on spontaneously active cerebral networks such as the default-mode network. A data-driven technique, the independent component analysis, allows segregating such spontaneous (co-)activity maps (SAM) from noise in functional magnetic resonance imaging (fMRI) time series. The inter-rater reliability of manual selection of not only the default-mode network but all SAMs remained to be assessed.
  
  
  METHODS
  The current study was performed on 20 min (400 volumes) fMRI time series of 30 healthy participants. SAMs' selection criteria were first established on past experience and from the literature. The inter-rater reliability of SAMs vs non-SAMs manual selection was then investigated from 250 independent components per participant.
  
  
  RESULTS
  Inter-rater Kappa coefficient was of 0.89 ± 0.01 on whole analysis, and 0.88 ± 0.09 on participant per participant analysis.
  
  
  METHODS
  Without focusing on specific and predetermined SAMs only, our criteria allow a reliable selection of all SAMs including the idiosyncratic networks.
  
  
  CONCLUSIONS
  The proposed SAM's selection criteria are reliable enough to allow scientific exploration of all SAMs at the single subject level.
authors: ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, Strasbourg, France. Electronic address: daniel.roquet@unistra.fr.
authors: Daniel R
authors: DR
authors: Roquet
authors: INSERM U1114, Fédération de Médecine Translationnelle de Strasbourg, Strasbourg, France. Electronic address: bich.thuy.pham@unistra.fr.
authors: Bich-Tuy
authors: BT
authors: Pham
authors: ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, Strasbourg, France; HUS, Hôpitaux Universitaires de Strasbourg, Strasbourg, France. Electronic address: jack.foucher@laposte.net.
authors: Jack R
authors: JR
authors: Foucher
mesh_terms: D000328:Adult; D001921:Brain / Q000098:blood supply / Q000502:physiology*; D001931:Brain Mapping; D005260:Female; D006801:Humans; D007091:Image Processing, Computer-Assisted; D008279:Magnetic Resonance Imaging; D008297:Male; D008606:Mental Processes / Q000502:physiology*; D008875:Middle Aged; D016571:Neural Networks, Computer; D015588:Observer Variation; D010100:Oxygen / Q000097:blood; D025341:Principal Component Analysis; D015203:Reproducibility of Results
chemical_list: D010100:Oxygen
keywords: Default mode network; FMRI; Independent component analysis; Inter-rater reliability; Manual selection; Spontaneous activity