title: Critical assessment of methods of protein structure prediction (CASP)--round x.
abstract: This article is an introduction to the special issue of the journal PROTEINS, dedicated to the tenth Critical Assessment of Structure Prediction (CASP) experiment to assess the state of the art in protein structure modeling. The article describes the conduct of the experiment, the categories of prediction included, and outlines the evaluation and assessment procedures. The 10 CASP experiments span almost 20 years of progress in the field of protein structure modeling, and there have been enormous advances in methods and model accuracy in that period. Notable in this round is the first sustained improvement of models with refinement methods, using molecular dynamics. For the first time, we tested the ability of modeling methods to make use of sparse experimental three-dimensional contact information, such as may be obtained from new experimental techniques, with encouraging results. On the other hand, new contact prediction methods, though holding considerable promise, have yet to make an impact in CASP testing. The nature of CASP targets has been changing in recent CASPs, reflecting shifts in experimental structural biology, with more irregular structures, more multi-domain and multi-subunit structures, and less standard versions of known folds. When allowance is made for these factors, we continue to see steady progress in the overall accuracy of models, particularly resulting from improvement of non-template regions.
authors.affiliation: Institute for Bioscience and Biotechnology Research and Department of Cell Biology and Molecular Genetics, University of Maryland, Rockville, Maryland, 20850.
authors.forename: John
authors.initials: J
authors.lastname: Moult
authors.forename: Krzysztof
authors.initials: K
authors.lastname: Fidelis
authors.forename: Andriy
authors.initials: A
authors.lastname: Kryshtafovych
authors.forename: Torsten
authors.initials: T
authors.lastname: Schwede
authors.forename: Anna
authors.initials: A
authors.lastname: Tramontano
mesh_terms: D019295:Computational Biology / Q000379:methods*; D008958:Models, Molecular; D056004:Molecular Dynamics Simulation; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*; D020539:Sequence Analysis, Protein
chemical_list: D011506:Proteins
keywords: CASP; community wide experiment; protein structure prediction