title: Neural system prediction and identification challenge.
abstract: Can we infer the function of a biological neural network (BNN) if we know the connectivity and activity of all its constituent neurons?This question is at the core of neuroscience and, accordingly, various methods have been developed to record the activity and connectivity of as many neurons as possible. Surprisingly, there is no theoretical or computational demonstration that neuronal activity and connectivity are indeed sufficient to infer the function of a BNN. Therefore, we pose the Neural Systems Identification and Prediction Challenge (nuSPIC). We provide the connectivity and activity of all neurons and invite participants (1) to infer the functions implemented (hard-wired) in spiking neural networks (SNNs) by stimulating and recording the activity of neurons and, (2) to implement predefined mathematical/biological functions using SNNs. The nuSPICs can be accessed via a web-interface to the NEST simulator and the user is not required to know any specific programming language. Furthermore, the nuSPICs can be used as a teaching tool. Finally, nuSPICs use the crowd-sourcing model to address scientific issues. With this computational approach we aim to identify which functions can be inferred by systematic recordings of neuronal activity and connectivity. In addition, nuSPICs will help the design and application of new experimental paradigms based on the structure of the SNN and the presumed function which is to be discovered.
authors.affiliation: Faculty of Biology, Bernstein Center Freiburg, University of Freiburg Freiburg im Breisgau, Germany.
authors.forename: Ioannis
authors.initials: I
authors.lastname: Vlachos
authors.affiliation: Faculty of Biology, Bernstein Center Freiburg, University of Freiburg Freiburg im Breisgau, Germany ; Simulation Laboratory Neuroscience - Bernstein Facility for Simulation and Database Technology, Institute for Advanced Simulation, Jülich Aachen Research Alliance, Jülich Research Center Jülich, Germany.
authors.forename: Yury V
authors.initials: YV
authors.lastname: Zaytsev
authors.affiliation: Faculty of Biology, Bernstein Center Freiburg, University of Freiburg Freiburg im Breisgau, Germany.
authors.forename: Sebastian
authors.initials: S
authors.lastname: Spreizer
authors.affiliation: Faculty of Biology, Bernstein Center Freiburg, University of Freiburg Freiburg im Breisgau, Germany.
authors.forename: Ad
authors.initials: A
authors.lastname: Aertsen
authors.affiliation: Faculty of Biology, Bernstein Center Freiburg, University of Freiburg Freiburg im Breisgau, Germany.
authors.forename: Arvind
authors.initials: A
authors.lastname: Kumar
keywords: NEST; network function; network simulation; nuSPIC; spiking neural network