title: A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus.
abstract: Synechococcus, the second most abundant oxygenic phototroph in the marine environment, harbors the largest pigment diversity known within a single genus of cyanobacteria, allowing it to exploit a wide range of light niches. Some strains are capable of Type IV chromatic acclimation (CA4), a process by which cells can match the phycobilin content of their phycobilisomes to the ambient light quality. Here, we performed extensive genomic comparisons to explore the diversity of this process within the marine Synechococcus radiation. A specific gene island was identified in all CA4-performing strains, containing two genes (fciA/b) coding for possible transcriptional regulators and one gene coding for a phycobilin lyase. However, two distinct configurations of this cluster were observed, depending on the lineage. CA4-A islands contain the mpeZ gene, encoding a recently characterized phycoerythrobilin lyase-isomerase, and a third, small, possible regulator called fciC. In CA4-B islands, the lyase gene encodes an uncharacterized relative of MpeZ, called MpeW. While mpeZ is expressed more in blue light than green light, this is the reverse for mpeW, although only small phenotypic differences were found among chromatic acclimaters possessing either CA4 island type. This study provides novel insights into understanding both diversity and evolution of the CA4 process.
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Florian
authors.initials: F
authors.lastname: Humily
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Frédéric
authors.initials: F
authors.lastname: Partensky
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Christophe
authors.initials: C
authors.lastname: Six
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Gregory K
authors.initials: GK
authors.lastname: Farrant
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Morgane
authors.initials: M
authors.lastname: Ratin
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Dominique
authors.initials: D
authors.lastname: Marie
authors.affiliation: Université Pierre et Marie Curie (Paris VI), Station Biologique, Roscoff, France ; Centre National de la Recherche Scientifique (CNRS), UMR 7144, Oceanic Plankton group, Marine Phototrophic Prokaryotes team, Roscoff, France.
authors.forename: Laurence
authors.initials: L
authors.lastname: Garczarek
mesh_terms: D000064:Acclimatization / Q000235:genetics / Q000502:physiology*; D001426:Bacterial Proteins / Q000235:genetics; D019143:Evolution, Molecular; D015964:Gene Expression Regulation, Bacterial / Q000235:genetics / Q000528:radiation effects; D014644:Genetic Variation / Q000235:genetics*; D044404:Genomic Islands / Q000235:genetics*; D008027:Light; D016013:Likelihood Functions; D008190:Lyases / Q000235:genetics; D008957:Models, Genetic; D010802:Phylogeny; D010860:Pigments, Biological / Q000235:genetics / Q000378:metabolism*; D013045:Species Specificity; D046940:Synechococcus / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins; D010860:Pigments, Biological; D008190:Lyases