title: Culture-independent pilot study of microbiota colonizing open fractures and association with severity, mechanism, location, and complication from presentation to early outpatient follow-up.
abstract: Precise identification of bacteria associated with post-injury infection, co-morbidities, and outcomes could have a tremendous impact in the management and treatment of open fractures. We characterized microbiota colonizing open fractures using culture-independent, high-throughput DNA sequencing of bacterial 16S ribosomal RNA genes, and analyzed those communities with respect to injury mechanism, severity, anatomical site, and infectious complications. Thirty subjects presenting to the Hospital of the University of Pennsylvania for acute care of open fractures were enrolled in a prospective cohort study. Microbiota was collected from wound center and adjacent skin upon presentation to the emergency department, intraoperatively, and at two outpatient follow-up visits at approximately 25 and 50 days following initial presentation. Bacterial community composition and diversity colonizing open fracture wounds became increasingly similar to adjacent skin microbiota with healing. Mechanism of injury, severity, complication, and location were all associated with various aspects of microbiota diversity and composition. The results of this pilot study demonstrate the diversity and dynamism of the open fracture microbiota, and their relationship to clinical variables. Validation of these preliminary findings in larger cohorts may lead to the identification of microbiome-based biomarkers of complication risk and/or to aid in management and treatment of open fractures.
authors.affiliation: Department of Dermatology, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania.
authors.forename: Geoffrey D
authors.initials: GD
authors.lastname: Hannigan
authors.forename: Brendan P
authors.initials: BP
authors.lastname: Hodkinson
authors.forename: Kelly
authors.initials: K
authors.lastname: McGinnis
authors.forename: Amanda S
authors.initials: AS
authors.lastname: Tyldsley
authors.forename: Jason B
authors.initials: JB
authors.lastname: Anari
authors.forename: Annamarie D
authors.initials: AD
authors.lastname: Horan
authors.forename: Elizabeth A
authors.initials: EA
authors.lastname: Grice
authors.forename: Samir
authors.initials: S
authors.lastname: Mehta
mesh_terms: D000293:Adolescent; D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D015169:Colony Count, Microbial; D005260:Female; D005500:Follow-Up Studies; D005597:Fractures, Open / Q000150:complications / Q000453:epidemiology / Q000382:microbiology*; D006801:Humans; D008297:Male; D064307:Microbiota / Q000502:physiology*; D008875:Middle Aged; D010045:Outpatients; D010414:Pennsylvania / Q000453:epidemiology; D010865:Pilot Projects; D011446:Prospective Studies; D012867:Skin / Q000382:microbiology; D055815:Young Adult
keywords: 16S rRNA; bacteria; infection; microbiome; open fracture