title: On the energy density of helical proteins.
abstract: We solve the problem of determining the energy actions whose moduli space of extremals contains the class of Lancret helices with a prescribed slope. We first see that the energy density should be linear both in the total bending and in the total twisting, such that the ratio between the weights of them is the prescribed slope. This will give an affirmative answer to the conjecture stated in Barros and Ferrández (J Math Phys 50:103529, 2009). Then, we normalize to get the best choice for the helical energy. It allows us to show that the energy, for instance of a protein chain, does not depend on the slope and is invariant under homotopic changes of the cross section which determines the cylinder where the helix is lying. In particular, the energy of a helix is not arbitrary, but it is given as natural multiples of some basic quantity of energy.
authors.affiliation: Departamento de Geometria y Topología, Facultad de Ciencias, Universidad de Granada, 18071 , Granada, Spain, mbarros@ugr.es.
authors.forename: Manuel
authors.initials: M
authors.lastname: Barros
authors.forename: Angel
authors.initials: A
authors.lastname: Ferrández
mesh_terms: D008956:Models, Chemical; D017433:Protein Structure, Secondary; D011506:Proteins / Q000737:chemistry*; D013816:Thermodynamics
chemical_list: D011506:Proteins