title: DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data.
abstract: DIYABC is a software package for a comprehensive analysis of population history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 implements a number of new features and analytical methods. It allows (i) the analysis of single nucleotide polymorphism data at large number of loci, apart from microsatellite and DNA sequence data, (ii) efficient Bayesian model choice using linear discriminant analysis on summary statistics and (iii) the serial launching of multiple post-processing analyses. DIYABC v2.0 also includes a user-friendly graphical interface with various new options. It can be run on three operating systems: GNU/Linux, Microsoft Windows and Apple Os X.
  
  
  
  Freely available with a detailed notice document and example projects to academic users at http://www1.montpellier.inra.fr/CBGP/diyabc CONTACT: estoup@supagro.inra.fr Supplementary information: Supplementary data are available at Bioinformatics online.
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Jean-Marie
authors.initials: JM
authors.lastname: Cornuet
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Pierre
authors.initials: P
authors.lastname: Pudlo
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Julien
authors.initials: J
authors.lastname: Veyssier
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Alexandre
authors.initials: A
authors.lastname: Dehne-Garcia
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Mathieu
authors.initials: M
authors.lastname: Gautier
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Raphaël
authors.initials: R
authors.lastname: Leblois
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Jean-Michel
authors.initials: JM
authors.lastname: Marin
authors.affiliation: Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France Inra, UMR1062 cbgp, Montpellier, France, Université Montpellier 2, UMR CNRS 5149, I3M, Montpellier, France, Institut de Biologie Computationnelle (IBC), 34095 Montpellier, France and CNRS-UM2, Institut de Biologie Computationnelle, LIRMM, Montpellier, France.
authors.forename: Arnaud
authors.initials: A
authors.lastname: Estoup
mesh_terms: D001499:Bayes Theorem; D019295:Computational Biology; D005828:Genetics, Population / Q000379:methods*; D006801:Humans; D018895:Microsatellite Repeats; D020641:Polymorphism, Single Nucleotide; D017422:Sequence Analysis, DNA; D012984:Software