title: A mass-spring model unveils the morphogenesis of phototrophic Diatoma biofilms.
abstract: Diatoms often dominate planktonic communities in the ocean and phototrophic biofilms in streams and rivers, greatly contributing to global biogeochemical fluxes. In pelagic ecosystems, these microscopic algae can form chain-like microcolonies, which seem advantageous for nutrient uptake and protect against grazing, and at the same time reduce sinking. Despite the capability of many diatoms to form chains, their contribution to the architecture of phototrophic biofilms remains elusive. Here we propose a computational model to simulate the growth and behaviour of Diatoma chains in contrasting flow environments. This mass-spring mechanical model captures the natural behaviour of Diatoma chains well, emphasising the relevance of chain growth and entanglement for biofilm morphogenesis. The model qualitatively describes formation of intricate dome-shaped structures and of dreadlock-type streamers as observed in nature in multidirectional and unidirectional flow, respectively. The proposed model is a useful tool to study the effect of fluid dynamics on biofilm morphogenesis.
authors.affiliation: 1] Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2828 BC, Delft, The Netherlands [2] Molecular Biotechnology, Institute of Biology Leiden, Sylvius Laboratories, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
authors.forename: K
authors.initials: K
authors.lastname: Celler
authors.affiliation: Department of Limnology and Oceanography, University of Vienna, A-1090 Vienna, Austria.
authors.forename: I
authors.initials: I
authors.lastname: Hödl
authors.affiliation: Delft University of Technology, Faculty of Civil Engineering and Geosciences, Delft University of Technology, P.O. Box 5048, 2600 GA, Delft, The Netherlands.
authors.forename: A
authors.initials: A
authors.lastname: Simone
authors.affiliation: Department of Limnology and Oceanography, University of Vienna, A-1090 Vienna, Austria.
authors.forename: T J
authors.initials: TJ
authors.lastname: Battin
authors.affiliation: Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2828 BC, Delft, The Netherlands.
authors.forename: C
authors.initials: C
authors.lastname: Picioreanu
mesh_terms: D018441:Biofilms; D017377:Diatoms; D017753:Ecosystem; D004777:Environment; D008954:Models, Biological; D009024:Morphogenesis