title: Ethnic differences in CAPN10 SNP-19 in type 2 diabetes: a North-West Indian case control study and evidence from meta-analysis.
abstract: Summary Calpain 10 (CAPN10) variants have been associated with the genetic susceptibility to type 2 diabetes (T2D). In the present case-control study, we analysed the distribution of SNP-19 insertion/deletion (I/D) polymorphism in a total of 607 samples (103 T2D cases and 102 healthy controls) from Brahmin; (100 T2D cases and 100 healthy controls) from Bania and (100 T2D cases and 102 healthy controls) from Jat Sikh ethnic groups of the North-West Indian population. Increased frequency of I allele and II genotype was found in T2D in Brahmin ethnic group [P = 0·003, OR = 2·83 (1·43-5·61 at 95% CI)]. Significant correlation between II genotype and body mass index (BMI) was also observed [P = 0·003, OR = 3·31 (1·52-7·20 at 95% CI)]. No association for the genotypes and alleles was seen in Banias and Jat Sikhs. Our data suggests that SNP-19 I/D variation in the CAPN10 gene is modulated by ethnicity and influences the susceptibility to T2D in the North-West Indian population. We also performed a meta-analysis of relevant studies to assess the validity of this association. Data from 13 case-control studies with 15 760 samples comprising of 8395 T2D cases and 7365 controls were finally analysed. Significant heterogeneity between individual studies was evident in dominant and codominant models. The results of present meta-analysis indicate an association of T2D with carriers of DD genotype of CAPN10 I/D polymorphism. However, further analyses on a larger sample size are required to establish a conclusive association in meta-analysis.
authors.affiliation: Department of Human Genetics, Guru Nanak Dev University, Amritsar 143005, Punjab, India.
authors.forename: Rubina
authors.initials: R
authors.lastname: Sharma
authors.affiliation: Department of Human Genetics, Guru Nanak Dev University, Amritsar 143005, Punjab, India.
authors.forename: Kawaljit
authors.initials: K
authors.lastname: Matharoo
authors.affiliation: Heart Station and Diabetes Clinic, 2-Rani Ka Bagh, Amritsar 143001, Punjab, India.
authors.forename: Rohit
authors.initials: R
authors.lastname: Kapoor
authors.affiliation: International American University, Vieux fort, Saint Lucia, West Indies.
authors.forename: Himanshi
authors.initials: H
authors.lastname: Chopra
authors.affiliation: Department of Human Genetics, Guru Nanak Dev University, Amritsar 143005, Punjab, India.
authors.forename: A J S
authors.initials: AJ
authors.lastname: Bhanwer
mesh_terms: D015992:Body Mass Index; D002154:Calpain / Q000235:genetics*; D016022:Case-Control Studies; D003924:Diabetes Mellitus, Type 2 / Q000235:genetics*; D006801:Humans; D007194:India; D020641:Polymorphism, Single Nucleotide
chemical_list: D002154:Calpain; C415197:calpain 10