title: Global phylogeography of Dengue type 1 and 2 viruses reveals the role of India.
abstract: Patterns in virus dispersal and epidemiology of viral diseases can be revealed by phylogeographic studies. Currently knowledge about phylogeography of Dengue virus (DENV) Types 1 and 2 is limited. We carried out the phylogeographic analyses for DENV-1 and DENV-2, by the Bayesian Markov Chain Monte Carlo (MCMC) approach, with emphasis on Indian isolates in relation to the global evolutionary dynamics of the viruses. More than 250 E-gene sequences of each virus, available in GenBank, were used for the analyses. The study was focused on understanding the most likely geographical origin for the major genotypes and sub-lineages of DENV-1/DENV-2 and also the possible pathways in the dispersal of the virus. The results showed that for DENV-1, Southeast Asia was the most likely geographical origin and India was determined to be the ancestral location of the Cosmopolitan genotype circulating in India, Sri Lanka, West and East Africa, Caribbean region, East and Southeast Asia. For DENV-2, the ancestral source could not be precisely inferred. Further, in spite of the earliest isolate from Trinidad-1953 of the American genotype, it was depicted that India may have been the probable ancestor of this genotype. India was also determined to be the ancestral location of a subgroup of the Cosmopolitan genotype. It was noted that DENV-1 and DENV-2 were introduced into India during 1940s and 1910s respectively. Subsequently, dispersal of both the viruses between India and different regions including West, East and Central Africa, Southeast and East Asia and Caribbean was inferred. Overall, the current study provides insight into the spatial as well as temporal dynamics of dengue virus serotypes 1 and 2.
authors.affiliation: Bioinformatics and Data Management Group, National Institute of Virology, 20-A, Dr. Ambedkar Road, Post Box No. 11, Pune 411001, Maharashtra, India. Electronic address: atulmw@gmail.com.
authors.forename: Atul M
authors.initials: AM
authors.lastname: Walimbe
authors.affiliation: Bioinformatics and Data Management Group, National Institute of Virology, 20-A, Dr. Ambedkar Road, Post Box No. 11, Pune 411001, Maharashtra, India. Electronic address: mrunallotankar@gmail.com.
authors.forename: Mrunalini
authors.initials: M
authors.lastname: Lotankar
authors.affiliation: Dengue Group, National Institute of Virology, 20-A, Dr. Ambedkar Road, Post Box No. 11, Pune 411001, Maharashtra, India. Electronic address: Cecilia.dayaraj@gmail.com.
authors.forename: D
authors.initials: D
authors.lastname: Cecilia
authors.affiliation: Bioinformatics and Data Management Group, National Institute of Virology, 20-A, Dr. Ambedkar Road, Post Box No. 11, Pune 411001, Maharashtra, India. Electronic address: cheriansarah@yahoo.co.in.
authors.forename: Sarah S
authors.initials: SS
authors.lastname: Cherian
mesh_terms: D001499:Bayes Theorem; D003715:Dengue / Q000453:epidemiology* / Q000821:virology*; D003716:Dengue Virus / Q000145:classification* / Q000235:genetics*; D014943:Global Health; D006801:Humans; D007194:India / Q000453:epidemiology; D058974:Phylogeography
keywords: Bayesian phylogeny; DENV-1; DENV-2; India; Migration patterns; Phylogeography