Temporal alterations in the secretome of the selective ligninolytic fungus Ceriporiopsis subvermispora during growth on aspen wood reveal this organism's strategy for degrading lignocellulose.
The white-rot basidiomycetes efficiently degrade all wood cell wall polymers. Generally, these fungi simultaneously degrade cellulose and lignin, but certain organisms, such as Ceriporiopsis subvermispora, selectively remove lignin in advance of cellulose degradation. However, relatively little is known about the mechanism of selective ligninolysis. To address this issue, C. subvermispora was grown in liquid medium containing ball-milled aspen, and nano-liquid chromatography-tandem mass spectrometry was used to identify and estimate extracellular protein abundance over time. Several manganese peroxidases and an aryl alcohol oxidase, both associated with lignin degradation, were identified after 3 days of incubation. A glycoside hydrolase (GH) family 51 arabinofuranosidase was also identified after 3 days but then successively decreased in later samples. Several enzymes related to cellulose and xylan degradation, such as GH10 endoxylanase, GH5_5 endoglucanase, and GH7 cellobiohydrolase, were detected after 5 days. Peptides corresponding to potential cellulose-degrading enzymes GH12, GH45, lytic polysaccharide monooxygenase, and cellobiose dehydrogenase were most abundant after 7 days. This sequential production of enzymes provides a mechanism consistent with selective ligninolysis by C. subvermispora.
U.S. Department of Agriculture, Forest Products Laboratory, Madison, Wisconsin, USA.
Chiaki
C
Hori
Jill
J
Gaskell
Kiyohiko
K
Igarashi
Phil
P
Kersten
Michael
M
Mozuch
Masahiro
M
Samejima
Dan
D
Cullen
D001711:Biotransformation; D002853:Chromatography, Liquid; D055453:Coriolaceae / Q000201:enzymology* / Q000254:growth & development / Q000378:metabolism*; D004798:Enzymes / Q000378:metabolism*; D005656:Fungal Proteins / Q000378:metabolism*; D020869:Gene Expression Profiling; D008031:Lignin / Q000378:metabolism*; D013058:Mass Spectrometry; D020543:Proteome / Q000032:analysis*; D013997:Time Factors; D014934:Wood / Q000382:microbiology*
D004798:Enzymes; D005656:Fungal Proteins; D020543:Proteome; C036909:lignocellulose; D008031:Lignin