The fiber walk: a model of tip-driven growth with lateral expansion.
Tip-driven growth processes underlie the development of many plants. To date, tip-driven growth processes have been modeled as an elongating path or series of segments, without taking into account lateral expansion during elongation. Instead, models of growth often introduce an explicit thickness by expanding the area around the completed elongated path. Modeling expansion in this way can lead to contradictions in the physical plausibility of the resulting surface and to uncertainty about how the object reached certain regions of space. Here, we introduce fiber walks as a self-avoiding random walk model for tip-driven growth processes that includes lateral expansion. In 2D, the fiber walk takes place on a square lattice and the space occupied by the fiber is modeled as a lateral contraction of the lattice. This contraction influences the possible subsequent steps of the fiber walk. The boundary of the area consumed by the contraction is derived as the dual of the lattice faces adjacent to the fiber. We show that fiber walks generate fibers that have well-defined curvatures, and thus enable the identification of the process underlying the occupancy of physical space. Hence, fiber walks provide a base from which to model both the extension and expansion of physical biological objects with finite thickness.
Georgia Institute of Technology, School of Interactive Computing, Atlanta, Georgia, United States of America ; Georgia Institute of Technology, School of Biology, Atlanta, Georgia, United States of America.
Alexander
A
Bucksch
Georgia Institute of Technology, School of Interactive Computing, Atlanta, Georgia, United States of America.
Greg
G
Turk
Georgia Institute of Technology, School of Biology, Atlanta, Georgia, United States of America ; Georgia Institute of Technology, School of Physics, Atlanta, Georgia, United States of America.
Joshua S
JS
Weitz
D000465:Algorithms; D019070:Cell Lineage; D003198:Computer Simulation; D008954:Models, Biological; D059828:Plant Cells / Q000502:physiology*; D063245:Plant Development