Capturing intracellular pH dynamics by coupling its molecular mechanisms within a fully tractable mathematical model.
We describe the construction of a fully tractable mathematical model for intracellular pH. This work is based on coupling the kinetic equations depicting the molecular mechanisms for pumps, transporters and chemical reactions, which determine this parameter in eukaryotic cells. Thus, our system also calculates the membrane potential and the cytosolic ionic composition. Such a model required the development of a novel algebraic method that couples differential equations for slow relaxation processes to steady-state equations for fast chemical reactions. Compared to classical heuristic approaches based on fitted curves and ad hoc constants, this yields significant improvements. This model is mathematically self-consistent and allows for the first time to establish analytical solutions for steady-state pH and a reduced differential equation for pH regulation. Because of its modular structure, it can integrate any additional mechanism that will directly or indirectly affect pH. In addition, it provides mathematical clarifications for widely observed biological phenomena such as overshooting in regulatory loops. Finally, instead of including a limited set of experimental results to fit our model, we show examples of numerical calculations that are extremely consistent with the wide body of intracellular pH experimental measurements gathered by different groups in many different cellular systems.
Université Nice Sophia Antipolis, CNRS, LPMC, UMR 7336, Nice, France.
Yann
Y
Bouret
Université Nice Sophia Antipolis, CNRS, INLN, UMR 7335, Valbonne, France ; Institut Universitaire de France (IUF), Ministère de l'Enseignement Supérieur et de la Recherche Scientifique, Paris, France.
Médéric
M
Argentina
Université Nice Sophia Antipolis, CNRS, LP2M, FRE 3472, Nice, France.
Laurent
L
Counillon
D000138:Acidosis / Q000378:metabolism; D000818:Animals; D002245:Carbon Dioxide / Q000378:metabolism; D003198:Computer Simulation; D006863:Hydrogen-Ion Concentration; D042541:Intracellular Space / Q000378:metabolism*; D007511:Ischemia / Q000378:metabolism; D007700:Kinetics; D008954:Models, Biological
D002245:Carbon Dioxide