Insights into the distribution and abundance of the ubiquitous candidatus Saccharibacteria phylum following tag pyrosequencing.
The phylum candidatus Saccharibacteria formerly known as Candidate Division TM7 is a highly ubiquitous phylum with 16S rRNA gene sequences reported in soils, sediments, wastewater and animals, as well as a host of clinical environments. Here, the application of two taxon-specific primers on environmental and human-associated samples using bar-coded tag pyrosequencing revealed two new clades for this phylum to exist and we propose that the division consists of 2 monophyletic and 2 polyphyletic clades. Investigation into TM7 ecology revealed that a high proportion (58%) of phylotypes were sample specific, few were widely distributed and of those most widely distributed all belonged to subdivision 3. Additionally, 50% of the most relatively abundant phylotypes observed were also subdivision 3 members. Community analysis showed that despite the presence of a high proportion of unique phylotypes, specific groups of samples still harbor similar TM7 communities with samples clustering together. The lack of relatively abundant phylotypes from subdivisions 1, 2 and 4 and the presence of very few cosmopolitan members' highlights not only the site specific nature of this phylum but provides insight into why the majority of studies into TM7 have been biased towards subdivision 3.
School of Biotechnology and Biomolecular Sciences, UNSW Australia, Randwick, NSW, 2052, Australia.
Belinda
B
Ferrari
School of Biotechnology and Biomolecular Sciences, UNSW Australia, Randwick, NSW, 2052, Australia.
Tristrom
T
Winsley
School of Biotechnology and Biomolecular Sciences, UNSW Australia, Randwick, NSW, 2052, Australia.
Mukan
M
Ji
School of Biotechnology and Biomolecular Sciences, UNSW Australia, Randwick, NSW, 2052, Australia.
Brett
B
Neilan
D001419:Bacteria / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D001483:Base Sequence; D058893:DNA Barcoding, Taxonomic; D017931:DNA Primers / Q000235:genetics*; D004269:DNA, Bacterial / Q000032:analysis / Q000235:genetics; D008969:Molecular Sequence Data; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics*; D017422:Sequence Analysis, DNA
D017931:DNA Primers; D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S