title: Altered retinal microRNA expression profiles in early diabetic retinopathy: an in silico analysis.
abstract: OBJECTIVE
  MicroRNAs (miRNAs) - as negative regulators of target genes - are associated with various human diseases, but their precise role(s) in diabetic retinopathy (DR) remains to be elucidated. The aim of this study was to elucidate the involvement of miRNAs in early DR using in silico analysis to explore their gene expression patterns.
  
  
  METHODS
  We used the streptozotocin (STZ)-induced diabetic rat to investigate the roles of miRNAs in early DR. Retinal miRNA expression profiles from diabetic versus healthy control rats were examined by miRNA array analysis. Based on several bioinformatic systems, specifically, gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, we identified signatures of the potential pathological processes, gene functions, and signaling pathways that are influenced by dysregulated miRNAs. We used quantitative real-time polymerase chain reaction (qRT-PCR) to validate six (i.e. those with significant changes in expression levels) of the 17 miRNAs that were detected in the miRNA array. We also describe the significant role of the miRNA-gene network, which is based on the interactions between miRNAs and target genes.
  
  
  RESULTS
  GO analysis of the 17 miRNAs detected in the miRNA array analysis revealed the most prevalent miRNAs to be those related to biological processes, olfactory bulb development and axonogenesis. These miRNAs also exert significant influence on additional pathways, including the mitogen-activated protein and calcium signaling pathways. Six of the seventeen miRNAs were chosen for qRT-PCR validation. With the exception of a slight difference in miRNA-350, our results are in close agreement with the differential expressions detected by array analysis.
  
  
  CONCLUSIONS
  This study, which describes miRNA expression during the early developmental phases of DR, revealed extensive miRNA interactions. Based on both their target genes and signaling pathways, we suggest that miRNAs perform critical regulatory functions during the early stages of DR evolution.
authors: Department of Ophthalmology, The Sixth People's Hospital, Shanghai Jiaotong University , Shanghai , China.
authors: Fen
authors: F
authors: Xiong
authors: Xinhua
authors: X
authors: Du
authors: Jianyan
authors: J
authors: Hu
authors: Tingting
authors: T
authors: Li
authors: Shanshan
authors: S
authors: Du
authors: Qiang
authors: Q
authors: Wu
mesh_terms: D000818:Animals; D003198:Computer Simulation; D003921:Diabetes Mellitus, Experimental; D003930:Diabetic Retinopathy / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D008297:Male; D035683:MicroRNAs / Q000096:biosynthesis / Q000235:genetics*; D051381:Rats; D060888:Real-Time Polymerase Chain Reaction; D015203:Reproducibility of Results; D012160:Retina / Q000378:metabolism* / Q000473:pathology; D013997:Time Factors
chemical_list: D035683:MicroRNAs
keywords: Bioinformatics; GO analysis; diabetic retinopathy; microRNA; pathway analysis