title: Molecular epidemiology and viral load of HCV in different regions of Punjab, Pakistan.
abstract: BACKGROUND
  Hepatitis C virus (HCV) is highly infectious pathogen which is responsible for causing Hepatitis around 200 million individuals worldwide. In Pakistan, 4.7% of HCV prevalence has been reported and HCV genotype 3a has been found to be the major source of infection in Pakistan but still there is lack of information on distribution of HCV genotypes and viral load in various geographical regions of Pakistan. Therefore, current study was designed to determine distribution of HCV genotypes as well viral load in different areas of Punjab province of Pakistan.
  
  
  RESULTS
  A total of 995 serum samples were taken from those individuals in which antibodies against HCV were detected through ELISA, from different regions of Punjab i.e. Lahore 317(31.85%), Faisalabad 70(7.03%), Gujranwala 129(12.96%), Gujrat 106(10.65%), Sialkot 94(9.44%), Sargodha 60(6.03%), Mandibaha-ud-din 135(13.56%), Jhang 86(8.64%). Qualitative PCR was performed to determine viral load and genotyping was performed using Nested PCR. Chi-square test was used to determine the age and sex-wise prevalence of HCV. Out of 995 samples, 888 samples were found positive for HCV RNA. In all regions, genotype 3a showed highest prevalence (82.81%) followed by genotype 1 (3.41%), mixed genotypes (2.41%), genotype 2 (0.50%), genotype 5 (0.1%) and unclassified genotypes (10.75%). Viral load in 29.5% patients infected with genotype 3a was less than 600,000 IU/mL, while it was between 600,000-800,000 IU/mL in 27.9% patients and 25.22% patients had more than 800,000 IU/mL viral load.
  
  
  CONCLUSIONS
  HCV genotype 3a is the most prevalent genotype in various regions of Punjab. Viral load of HCV patients in these different regions of Punjab are reported for the first time. Moreover, based upon these results the Patients having viral load below 800,000 IU/mL would be expected to show better response of anti-HCV therapy.
authors: Quality Operations Laboratory, UVAS, Lahore 54000, Pakistan. suliman_afridi16@yahoo.com.
authors: Suliman Qadir
authors: SQ
authors: Afridi
authors: Muhammad Muddassir
authors: MM
authors: Ali
authors: Furqan
authors: F
authors: Awan
authors: Muhammad Nauman
authors: MN
authors: Zahid
authors: Irfan Qadir
authors: IQ
authors: Afridi
authors: Sara Qadir
authors: SQ
authors: Afridi
authors: Tahir
authors: T
authors: Yaqub
mesh_terms: D000293:Adolescent; D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D002648:Child; D004797:Enzyme-Linked Immunosorbent Assay; D005260:Female; D014644:Genetic Variation; D005838:Genotype; D016174:Hepacivirus / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D006526:Hepatitis C / Q000453:epidemiology* / Q000821:virology*; D018937:Hepatitis C Antibodies / Q000097:blood; D006801:Humans; D008297:Male; D008875:Middle Aged; D017720:Molecular Epidemiology; D010154:Pakistan / Q000453:epidemiology; D016133:Polymerase Chain Reaction; D015995:Prevalence; D019562:Viral Load; D055815:Young Adult
chemical_list: D018937:Hepatitis C Antibodies