title: The 3DGD: a database of genome 3D structure.
abstract: The studies of chromatin 3D structure help us to understand its formation and function. Techniques combining chromosome conformation capture and next generation sequencing can capture chromatin structure information and has been applied to several different species and cell lines. We built 3DGD (3D Genome Database), a database that currently collected Hi-C data on four species, for easy accessing and visualization of chromatin 3D structure data. With the integration of other omics data such as genome-wide protein-DNA-binding data, this data source would be useful for researchers interested in chromatin structure and its biological functions.
  
  
  METHODS
  The 3DGD v1.1, data browser, downloadable files and documentation are available at: http://3dgd.biosino.org/.
authors: Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. ChinaKey Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China.
authors: Chao
authors: C
authors: Li
authors: Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. ChinaKey Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China.
authors: Xiao
authors: X
authors: Dong
authors: Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China.
authors: Haiwei
authors: H
authors: Fan
authors: Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China.
authors: Chuan
authors: C
authors: Wang
authors: Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. ChinaKey Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China.
authors: Guohui
authors: G
authors: Ding
authors: Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. ChinaKey Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China.
authors: Yixue
authors: Y
authors: Li
mesh_terms: D000818:Animals; D002843:Chromatin / Q000737:chemistry* / Q000378:metabolism; D004268:DNA-Binding Proteins / Q000378:metabolism; D030541:Databases, Genetic; D016678:Genome; D006801:Humans; D051379:Mice
chemical_list: D002843:Chromatin; D004268:DNA-Binding Proteins