title: Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.
abstract: TF-218(T) is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabolite production and its anaerobic lifestyle, which have also been described for its closest relative Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218(T) contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five replicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218(T) possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.
authors: Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .
authors: Marco
authors: M
authors: Dogs
authors: Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
authors: Hazuki
authors: H
authors: Teshima
authors: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
authors: Jörn
authors: J
authors: Petersen
authors: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
authors: Anne
authors: A
authors: Fiebig
authors: Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
authors: Olga
authors: O
authors: Chertkov
authors: Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA.
authors: Hajnalka
authors: H
authors: Dalingault
authors: Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
authors: Amy
authors: A
authors: Chen
authors: DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Amrita
authors: A
authors: Pati
authors: Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA ; DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Lynne A
authors: LA
authors: Goodwin
authors: DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Patrick
authors: P
authors: Chain
authors: Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA ; DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: John C
authors: JC
authors: Detter
authors: DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Natalia
authors: N
authors: Ivanova
authors: DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Alla
authors: A
authors: Lapidus
authors: HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.
authors: Manfred
authors: M
authors: Rohde
authors: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
authors: Sabine
authors: S
authors: Gronow
authors: DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Nikos C
authors: NC
authors: Kyrpides
authors: DOE Joint Genome Institute, Walnut Creek, California, USA.
authors: Tanja
authors: T
authors: Woyke
authors: Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .
authors: Meinhard
authors: M
authors: Simon
authors: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
authors: Markus
authors: M
authors: Göker
authors: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
authors: Hans-Peter
authors: HP
authors: Klenk
authors: Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .
authors: Thorsten
authors: T
authors: Brinkhoff
keywords: Marine microbiology; Rhodobacteraceae; Roseobacter clade; facultative anaerobe; indigoidine