title: Crowdsourcing the verification of relationships in biomedical ontologies.
abstract: Biomedical ontologies are often large and complex, making ontology development and maintenance a challenge. To address this challenge, scientists use automated techniques to alleviate the difficulty of ontology development. However, for many ontology-engineering tasks, human judgment is still necessary. Microtask crowdsourcing, wherein human workers receive remuneration to complete simple, short tasks, is one method to obtain contributions by humans at a large scale. Previously, we developed and refined an effective method to verify ontology hierarchy using microtask crowdsourcing. In this work, we report on applying this method to find errors in the SNOMED CT CORE subset. By using crowdsourcing via Amazon Mechanical Turk with a Bayesian inference model, we correctly verified 86% of the relations from the CORE subset of SNOMED CT in which Rector and colleagues previously identified errors via manual inspection. Our results demonstrate that an ontology developer could deploy this method in order to audit large-scale ontologies quickly and relatively cheaply.
authors.affiliation: Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305-5479 U.S.A.
authors.forename: Jonathan M
authors.initials: JM
authors.lastname: Mortensen
authors.affiliation: Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305-5479 U.S.A.
authors.forename: Mark A
authors.initials: MA
authors.lastname: Musen
authors.affiliation: Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305-5479 U.S.A.
authors.forename: Natalya F
authors.initials: NF
authors.lastname: Noy
mesh_terms: D001499:Bayes Theorem; D064229:Biological Ontologies; D063045:Crowdsourcing; D039061:Systematized Nomenclature of Medicine