title: Land use type significantly affects microbial gene transcription in soil.
abstract: Soil microorganisms play an essential role in sustaining biogeochemical processes and cycling of nutrients across different land use types. To gain insights into microbial gene transcription in forest and grassland soil, we isolated mRNA from 32 sampling sites. After sequencing of generated complementary DNA (cDNA), a total of 5,824,229 sequences could be further analyzed. We were able to assign nonribosomal cDNA sequences to all three domains of life. A dominance of bacterial sequences, which were affiliated to 25 different phyla, was found. Bacterial groups capable of aromatic compound degradation such as Phenylobacterium and Burkholderia were detected in significantly higher relative abundance in forest soil than in grassland soil. Accordingly, KEGG pathway categories related to degradation of aromatic ring-containing molecules (e.g., benzoate degradation) were identified in high abundance within forest soil-derived metatranscriptomic datasets. The impact of land use type forest on community composition and activity is evidently to a high degree caused by the presence of wood breakdown products. Correspondingly, bacterial groups known to be involved in lignin degradation and containing ligninolytic genes such as Burkholderia, Bradyrhizobium, and Azospirillum exhibited increased transcriptional activity in forest soil. Higher solar radiation in grassland presumably induced increased transcription of photosynthesis-related genes within this land use type. This is in accordance with high abundance of photosynthetic organisms and plant-infecting viruses in grassland.
authors.affiliation: Department of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August-University Göttingen, Grisebachstr. 8, 37077, Göttingen, Germany.
authors.forename: Heiko
authors.initials: H
authors.lastname: Nacke
authors.forename: Christiane
authors.initials: C
authors.lastname: Fischer
authors.forename: Andrea
authors.initials: A
authors.lastname: Thürmer
authors.forename: Peter
authors.initials: P
authors.lastname: Meinicke
authors.forename: Rolf
authors.initials: R
authors.lastname: Daniel
mesh_terms: D001105:Archaea / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D056890:Eukaryota / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D065928:Forests; D065948:Grassland; D064307:Microbiota; D008969:Molecular Sequence Data; D010802:Phylogeny; D012333:RNA, Messenger / Q000235:genetics; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D059467:Transcriptome
chemical_list: D012333:RNA, Messenger