title: Genetic factors regulating lung vasculature and immune cell functions associate with resistance to pneumococcal infection.
abstract: Streptococcus pneumoniae is an important human pathogen responsible for high mortality and morbidity worldwide. The susceptibility to pneumococcal infections is controlled by as yet unknown genetic factors. To elucidate these factors could help to develop new medical treatments and tools to identify those most at risk. In recent years genome wide association studies (GWAS) in mice and humans have proved successful in identification of causal genes involved in many complex diseases for example diabetes, systemic lupus or cholesterol metabolism. In this study a GWAS approach was used to map genetic loci associated with susceptibility to pneumococcal infection in 26 inbred mouse strains. As a result four candidate QTLs were identified on chromosomes 7, 13, 18 and 19. Interestingly, the QTL on chromosome 7 was located within S. pneumoniae resistance QTL (Spir1) identified previously in a linkage study of BALB/cOlaHsd and CBA/CaOlaHsd F2 intercrosses. We showed that only a limited number of genes encoded within the QTLs carried phenotype-associated polymorphisms (22 genes out of several hundred located within the QTLs). These candidate genes are known to regulate TGFβ signalling, smooth muscle and immune cells functions. Interestingly, our pulmonary histopathology and gene expression data demonstrated, lung vasculature plays an important role in resistance to pneumococcal infection. Therefore we concluded that the cumulative effect of these candidate genes on vasculature and immune cells functions as contributory factors in the observed differences in susceptibility to pneumococcal infection. We also propose that TGFβ-mediated regulation of fibroblast differentiation plays an important role in development of invasive pneumococcal disease. Gene expression data submitted to the NCBI Gene Expression Omnibus Accession No: GSE49533 SNP data submitted to NCBI dbSNP Short Genetic Variation http://www.ncbi.nlm.nih.gov/projects/SNP/snp_viewTable.cgi?handle=MUSPNEUMONIA.
authors.affiliation: Department of Infection Immunity and Inflammation, University of Leicester, Leicester, United Kingdom.
authors.forename: Magda S
authors.initials: MS
authors.lastname: Jonczyk
authors.affiliation: MRC Harwell, Mammalian Genetics Unit, Oxford, United Kingdom.
authors.forename: Michelle
authors.initials: M
authors.lastname: Simon
authors.affiliation: MRC Harwell, Mammalian Genetics Unit, Oxford, United Kingdom.
authors.forename: Saumya
authors.initials: S
authors.lastname: Kumar
authors.affiliation: Department of Infection Immunity and Inflammation, University of Leicester, Leicester, United Kingdom.
authors.forename: Vitor E
authors.initials: VE
authors.lastname: Fernandes
authors.affiliation: Department of Genetics, University of Leicester, Leicester, United Kingdom.
authors.forename: Nicolas
authors.initials: N
authors.lastname: Sylvius
authors.affiliation: MRC Harwell, Mammalian Genetics Unit, Oxford, United Kingdom.
authors.forename: Ann-Marie
authors.initials: AM
authors.lastname: Mallon
authors.affiliation: MRC Harwell, Mammalian Genetics Unit, Oxford, United Kingdom.
authors.forename: Paul
authors.initials: P
authors.lastname: Denny
authors.affiliation: Department of Infection Immunity and Inflammation, University of Leicester, Leicester, United Kingdom.
authors.forename: Peter W
authors.initials: PW
authors.lastname: Andrew
mesh_terms: D000818:Animals; D055106:Genome-Wide Association Study; D006801:Humans; D008168:Lung / Q000098:blood supply* / Q000378:metabolism; D051379:Mice; D008807:Mice, Inbred BALB C; D008808:Mice, Inbred CBA; D011008:Pneumococcal Infections / Q000276:immunology*; D040641:Quantitative Trait Loci; D059467:Transcriptome