title: Relaxed functional constraints on triplicate α-globin gene in the bank vole suggest a different evolutionary history from other rodents.
abstract: Gene duplication plays an important role in the origin of evolutionary novelties, but the mechanisms responsible for the retention and functional divergence of the duplicated copy are not fully understood. The α-globin genes provide an example of a gene family with different numbers of gene duplicates among rodents. Whereas Rattus and Peromyscus each have three adult α-globin genes (HBA-T1, HBA-T2 and HBA-T3), Mus has only two copies. High rates of amino acid evolution in the independently derived HBA-T3 genes of Peromyscus and Rattus have been attributed to positive selection. Using RACE PCR, reverse transcription-PCR (RT-PCR) and RNA-seq, we show that another rodent, the bank vole Clethrionomys glareolus, possesses three transcriptionally active α-globin genes. The bank vole HBA-T3 gene is distinguished from each HBA-T1 and HBA-T2 by 20 amino acids and is transcribed 23- and 4-fold lower than HBA-T1 and HBA-T2, respectively. Polypeptides corresponding to all three genes are detected by electrophoresis, demonstrating that the translated products of HBA-T3 are present in adult erythrocytes. Patterns of codon substitution and the presence of low-frequency null alleles suggest a postduplication relaxation of purifying selection on bank vole HBA-T3.
authors.affiliation: Institute of Animal Physiology and Genetics, Academy of Sciences of the Czech Republic, Liběchov, Czech Republic.
authors.forename: S
authors.initials: S
authors.lastname: Marková
authors.affiliation: Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.
authors.forename: J B
authors.initials: JB
authors.lastname: Searle
authors.affiliation: Institute of Animal Physiology and Genetics, Academy of Sciences of the Czech Republic, Liběchov, Czech Republic.
authors.forename: P
authors.initials: P
authors.lastname: Kotlík
mesh_terms: D000818:Animals; D003411:Arvicolinae / Q000235:genetics*; D001483:Base Sequence; D001499:Bayes Theorem; D003001:Cloning, Molecular; D017931:DNA Primers / Q000235:genetics; D004586:Electrophoresis; D004912:Erythrocytes / Q000378:metabolism; D020131:Genes, Duplicate / Q000235:genetics*; D014644:Genetic Variation; D008957:Models, Genetic; D008969:Molecular Sequence Data; D010802:Phylogeny; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012641:Selection, Genetic; D017423:Sequence Analysis, RNA; D013045:Species Specificity; D055542:alpha-Globins / Q000235:genetics*
chemical_list: D017931:DNA Primers; D055542:alpha-Globins