title: Enzymatic and structural characterization of an archaeal thiamin phosphate synthase.
abstract: Studies on thiamin biosynthesis have so far been achieved in eubacteria, yeast and plants, in which the thiamin structure is formed as thiamin phosphate from a thiazole and a pyrimidine moiety. This condensation reaction is catalyzed by thiamin phosphate synthase, which is encoded by the thiE gene or its orthologs. On the other hand, most archaea do not seem to have the thiE gene, but instead their thiD gene, coding for a 2-methyl-4-amino-5-hydroxymethylpyrimidine (HMP) kinase/HMP phosphate kinase, possesses an additional C-terminal domain designated thiN. These two proteins, ThiE and ThiN, do not share sequence similarity. In this study, using recombinant protein from the hyperthermophile archaea Pyrobaculum calidifontis, we demonstrated that the ThiN protein is an analog of the ThiE protein, catalyzing the formation of thiamin phosphate with the release of inorganic pyrophosphate from HMP pyrophosphate and 4-methyl-5-β-hydroxyethylthiazole phosphate (HET-P). In addition, we found that the ThiN protein can liberate an inorganic pyrophosphate from HMP pyrophosphate in the absence of HET-P. A structure model of the enzyme-product complex of P. calidifontis ThiN domain was proposed on the basis of the known three-dimensional structure of the ortholog of Pyrococcus furiosus. The significance of Arg320 and His341 residues for thiN-coded thiamin phosphate synthase activity was confirmed by site-directed mutagenesis. This is the first report of the experimental analysis of an archaeal thiamin synthesis enzyme.
authors.affiliation: Department of Biochemistry, School of Pharmacy and Pharmaceutical Sciences, Mukogawa Women's University, Nishinomiya, Japan.
authors.forename: Maria
authors.initials: M
authors.lastname: Hayashi
authors.affiliation: Department of Medicinal Chemistry, Kyoto Pharmaceutical University, Kyoto, Japan.
authors.forename: Kazuya
authors.initials: K
authors.lastname: Kobayashi
authors.affiliation: Department of Chemistry, Hyogo College of Medicine, Nishinomiya, Japan.
authors.forename: Hiroyoshi
authors.initials: H
authors.lastname: Esaki
authors.affiliation: Department of Biochemical Engineering, Graduate School of Science and Technology, Yamagata University, Yonezawa, Japan.
authors.forename: Hiroyuki
authors.initials: H
authors.lastname: Konno
authors.affiliation: Department of Medicinal Chemistry, Kyoto Pharmaceutical University, Kyoto, Japan.
authors.forename: Kenichi
authors.initials: K
authors.lastname: Akaji
authors.affiliation: Daiichi College of Pharmaceutical Sciences, Fukuoka, Japan.
authors.forename: Keiko
authors.initials: K
authors.lastname: Tazuya
authors.affiliation: Department of Biochemistry, School of Pharmacy and Pharmaceutical Sciences, Mukogawa Women's University, Nishinomiya, Japan.
authors.forename: Kazuko
authors.initials: K
authors.lastname: Yamada
authors.affiliation: Department of Biochemistry, School of Pharmacy and Pharmaceutical Sciences, Mukogawa Women's University, Nishinomiya, Japan.
authors.forename: Toshikatsu
authors.initials: T
authors.lastname: Nakabayashi
authors.affiliation: Department of Chemistry, Hyogo College of Medicine, Nishinomiya, Japan. Electronic address: knosaka@hyo-med.ac.jp.
authors.forename: Kazuto
authors.initials: K
authors.lastname: Nosaka
mesh_terms: D019883:Alkyl and Aryl Transferases / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D000595:Amino Acid Sequence; D019843:Archaeal Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D020134:Catalytic Domain; D002686:Chitin / Q000737:chemistry* / Q000378:metabolism; D011756:Diphosphates / Q000737:chemistry / Q000378:metabolism; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism; D006868:Hydrolysis; D007527:Isoenzymes / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D008958:Models, Molecular; D008969:Molecular Sequence Data; D011485:Protein Binding; D011743:Pyrimidines / Q000737:chemistry / Q000378:metabolism; D041543:Pyrobaculum / Q000737:chemistry* / Q000201:enzymology / Q000235:genetics; D020027:Pyrococcus furiosus / Q000737:chemistry / Q000201:enzymology / Q000235:genetics; D011994:Recombinant Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D040681:Structural Homology, Protein; D013379:Substrate Specificity; D013816:Thermodynamics; D013833:Thiamine Monophosphate / Q000096:biosynthesis / Q000737:chemistry*
chemical_list: D019843:Archaeal Proteins; D011756:Diphosphates; D007527:Isoenzymes; D011743:Pyrimidines; D011994:Recombinant Proteins; D002686:Chitin; C107241:diphosphoric acid; D013833:Thiamine Monophosphate; D019883:Alkyl and Aryl Transferases; C435495:thiamin phosphate synthase
keywords: Molecular modeling; Pyrobaculum calidifontis; Thiamin; Thiamin phosphate synthase; thiN