title: Validation of vacuum-based refrigerated system for biobanking tissue preservation: analysis of cellular morphology, protein stability, and RNA quality.
abstract: Biobanks of fresh, unfixed human normal and malignant tissues represent a valuable source for gene expression analysis in translational cancer research and molecular pathology. However, the success of molecular and cellular analysis in both clinical and translational research is strongly dependent on the collection, handling, storage, and quality control of fresh human tissue samples. The aim of this study was to evaluate an innovative vacuum-based refrigerated system, as a logistically feasible technology to increase the collection of tissue specimens, preserving the integrity of cellular and molecular components. We tested randomly-selected tissues stored under vacuum at 4°C by using endpoints important for research and diagnosis, including tissue morphology, epitope stability, and RNA integrity. Gene expression was evaluated by qualitative and quantitative RT analysis of selected housekeeping and tissue-specific genes. Tissue morphology and overall protein stability were generally well preserved, being compromised only in gallbladder tissue. By contrast, phosphoprotein and RNA analysis demonstrated a time-dependent degree of degradation, with progressive loss of stability from 24 to 72 hours. However, this reduction in RNA quality did not represent a limitation for successful expression analysis of selected genes. Indeed, a comparative qualitative and quantitative RT-PCR analysis showed that RNA extracted from tissues stored under vacuum is suitable for gene expression profiling, but requires highly sensitive technologies, such as quantitative RT-PCR. These data suggest that the refrigerated vacuum-based system represents a suitable and feasible technology for routine transport of fresh specimens from surgery to biobanks, thus increasing the opportunity to collect biospecimens.
authors.affiliation: 1 Laboratory of Pre-Clinical and Translational Research, Referral Cancer Center of Basilicata (CROB) , Rionero in Vulture (PZ), Italy .
authors.forename: Valentina
authors.initials: V
authors.lastname: Condelli
authors.forename: Giacomo
authors.initials: G
authors.lastname: Lettini
authors.forename: Giuseppe
authors.initials: G
authors.lastname: Patitucci
authors.forename: Fiorella
authors.initials: F
authors.lastname: D'Auria
authors.forename: Michele
authors.initials: M
authors.lastname: D'Amico
authors.forename: Giulia
authors.initials: G
authors.lastname: Vita
authors.forename: Pellegrino
authors.initials: P
authors.lastname: Musto
authors.forename: Carmela
authors.initials: C
authors.lastname: Cuomo
authors.forename: Matteo
authors.initials: M
authors.lastname: Landriscina
mesh_terms: D018070:Biological Specimen Banks; D006652:Histological Techniques / Q000379:methods*; D006801:Humans; D055550:Protein Stability; D011506:Proteins / Q000032:analysis / Q000737:chemistry; D012313:RNA / Q000032:analysis / Q000737:chemistry / Q000235:genetics; D014021:Tissue Preservation / Q000379:methods*; D014618:Vacuum
chemical_list: D011506:Proteins; D012313:RNA