title: Petrotoga japonica sp. nov., a thermophilic, fermentative bacterium isolated from Yabase Oilfield in Japan.
abstract: A gram-negative, motile, fermentative, thermophilic bacterium, designated AR80(T), was isolated from a high-temperature oil reservoir in Yabase Oilfield in Akita, Japan. Cells were rod-shaped, motile by means of polar flagella, and formed circular, convex, white colonies. The strain grew at 40-65 °C (optimum 60 °C), 0.5-9 % (w/v) NaCl (optimum 0.5-1 %), pH 6-9 (optimum pH 7.5), and elemental sulfur or thiosulfate serves as terminal electron acceptor. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain AR80(T) belonged to the genus Petrotoga and shared approximately 94.5 % sequence similarity with the type species of this genus. The G + C content of genomic DNA was 32.4 mol% while the value of DNA-DNA hybridization between the closest relative species Petrotoga miotherma and AR80(T) was 58.1 %. The major cellular fatty acids of strain AR80(T) consisted of 18:1 w9c, 16:0, and 16:1 w9c. Based on genetic and phenotypic properties, strain AR80(T) was different with other identified Petrotoga species and represents as a novel species, for which the name Petrotoga japonica sp. nov. is proposed. The type strain is AR80(T) (=NBRC 108752(T) = KCTC 15103(T) = HUT 8122(T)).
authors.affiliation: School of Life Science and Technology, Bandung Institute of Technology, Ganesha 10, Bandung, West Java, 40132, Indonesia, isty@sith.itb.ac.id.
authors.forename: Isty Adhitya
authors.initials: IA
authors.lastname: Purwasena
authors.forename: Yuichi
authors.initials: Y
authors.lastname: Sugai
authors.forename: Kyuro
authors.initials: K
authors.lastname: Sasaki
mesh_terms: D015373:Bacterial Typing Techniques; D001482:Base Composition; D004269:DNA, Bacterial / Q000235:genetics; D005227:Fatty Acids / Q000737:chemistry; D005285:Fermentation; D016965:Gram-Negative Anaerobic Straight, Curved, and Helical Rods / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D006358:Hot Temperature; D007564:Japan; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D061329:Oil and Gas Fields / Q000382:microbiology*; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D013885:Thiosulfates / Q000378:metabolism
chemical_list: D004269:DNA, Bacterial; D005227:Fatty Acids; D012336:RNA, Ribosomal, 16S; D013885:Thiosulfates