title: Toward deciphering the genome-wide transcriptional responses of rice to phosphate starvation and recovery.
abstract: Phosphate (Pi) limitation is one of the major factors negatively impacting crop yield worldwide. Next generation sequencing (NGS) was used to profile the transcriptomes of rice (Oryza sativa) roots and shoots after phosphate starvation and recovery, shedding further light on the complex and dynamic mechanisms involved in Pi homeostasis. The use of NGS also enabled the identification of previously not annotated loci and novel isoforms of genes that are specifically induced by Pi starvation. Furthermore, phosphate re-feeding was observed to have a unique response with a variety of transcription factors and kinases induced in a transient manner. Expression profiles of miRNAs were also assessed upon long-term Pi starvation in roots and shoots revealing several novel miRNAs associated with Pi starvation. Altogether, this study provides key findings regarding Pi homeostasis in plants that will provide a valuable resource for research aimed at generating crops with increased Pi acquisition/use efficiency.
authors.affiliation: Department of Botany; School of Life Sciences; Australian Research Council Centre of Excellence in Plant Energy Biology; La Trobe University; Bundoora, VIC Australia.
authors.forename: David
authors.initials: D
authors.lastname: Secco
authors.affiliation: Australian Research Council Centre of Excellence in Plant Energy Biology; The University of Western Australia; Perth, WA Australia.
authors.forename: James
authors.initials: J
authors.lastname: Whelan
mesh_terms: D020869:Gene Expression Profiling; D018745:Genome, Plant; D012275:Oryza / Q000378:metabolism*; D010710:Phosphates / Q000378:metabolism*; D059467:Transcriptome
chemical_list: D010710:Phosphates
keywords: RNAseq; nutrient starvation; phosphate starvation; rice; transcriptome