title: Multiparametric Analysis of Screening Data: Growing Beyond the Single Dimension to Infinity and Beyond.
abstract: Advances in instrumentation now allow the development of screening assays that are capable of monitoring multiple readouts such as transcript or protein levels, or even multiple parameters derived from images. Such advances in assay technologies highlight the complex nature of biology and disease. Harnessing this complexity requires integration of all the different parameters that can be measured rather than just monitoring a single dimension as is commonly used. Although some of the methods used to combine multiple measurements, such as principal component analysis, are commonly used for microarray analysis, biologists are not yet using many of the tools that have been developed in other fields to address such issues. Visualization of multiparametric data sets is one of the major challenges in this field, and a depiction of the results in a manner that can be readily interpreted is essential. This article describes a number of assay systems being used to generate such data sets en masse, and the methods being applied to their visualization and analysis. We also discuss some of the challenges of applying methods developed in other fields to biology.
authors.affiliation: Novartis Institute for Biomedical Research, Basel, Switzerland yann.abraham@novartis.com.
authors.forename: Yann
authors.initials: Y
authors.lastname: Abraham
authors.affiliation: Novartis Institute for Biomedical Research, Basel, Switzerland.
authors.forename: Xian
authors.initials: X
authors.lastname: Zhang
authors.affiliation: Novartis Institute for Biomedical Research, Basel, Switzerland.
authors.forename: Christian N
authors.initials: CN
authors.lastname: Parker
mesh_terms: D000465:Algorithms; D002626:Chemistry, Pharmaceutical / Q000379:methods; D019295:Computational Biology / Q000379:methods*; D066264:Datasets as Topic; D057166:High-Throughput Screening Assays / Q000379:methods*; D000069550:Machine Learning; D010641:Phenotype; D025341:Principal Component Analysis; D011506:Proteins / Q000737:chemistry; D012313:RNA / Q000737:chemistry; D012984:Software
chemical_list: D011506:Proteins; D012313:RNA
keywords: cell-based screening; high-content screening; machine learning; multiparametric data analysis; multiparametric visualization