title: Are genes switched on when they kiss?
abstract: Chromatin loops are pervasive and permit the tight compaction of DNA within the confined space of the nucleus. Looping enables distal genes and DNA elements to engage in chromosomal contact, to form multigene complexes. Advances in biochemical and imaging techniques reveal that loop-mediated contact is strongly correlated with transcription of interacting DNA. However, these approaches only provide a snapshot of events and therefore are unable to reveal the dynamics of multigene complex assembly. This highlights the necessity to develop single cell-based assays that provide single molecule resolution, and are able to functionally interrogate the role of chromosomal contact on gene regulation. To this end, high-resolution single cell imaging regimes, combined with genome editing approaches, are proving to be pivotal to advancing our understanding of loop-mediated dynamics.
authors.affiliation: Gene Expression and Biophysics Group; Synthetic Biology Emerging Research Area; Biosciences Unit; Council for Scientific and Industrial Research; Pretoria, South Africa.
authors.forename: Stephanie
authors.initials: S
authors.lastname: Fanucchi
authors.affiliation: Gene Expression and Biophysics Group; Synthetic Biology Emerging Research Area; Biosciences Unit; Council for Scientific and Industrial Research; Pretoria, South Africa.
authors.forename: Youtaro
authors.initials: Y
authors.lastname: Shibayama
authors.affiliation: Gene Expression and Biophysics Group; Synthetic Biology Emerging Research Area; Biosciences Unit; Council for Scientific and Industrial Research; Pretoria, South Africa; Unidade de Biofísica e Expressão Genética; Instituto de Medicina Molecular; Faculdade de Medicina; Universidade de Lisboa; Lisboa, Portugal.
authors.forename: Musa M
authors.initials: MM
authors.lastname: Mhlanga
mesh_terms: D002843:Chromatin / Q000235:genetics / Q000378:metabolism; D002875:Chromosomes / Q000235:genetics* / Q000378:metabolism*; D005786:Gene Expression Regulation; D005796:Genes / Q000235:genetics*; D023281:Genomics; D006801:Humans
chemical_list: D002843:Chromatin
keywords: CRISPR; RNA; RNA FISH; TALEN; chromosomal looping; genome editing; multigene complex; single molecule imaging; transcription