title: Navigating and mining modENCODE data.
abstract: modENCODE was a 5year NHGRI funded project (2007-2012) to map the function of every base in the genomes of worms and flies characterizing positions of modified histones and other chromatin marks, origins of DNA replication, RNA transcripts and the transcription factor binding sites that control gene expression. Here we describe the Drosophila modENCODE datasets and how best to access and use them for genome wide and individual gene studies.
authors.affiliation: Department of Biostatistics, University of California Berkeley, Berkeley, CA, United States.
authors.forename: Nathan
authors.initials: N
authors.lastname: Boley
authors.affiliation: Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.
authors.forename: Kenneth H
authors.initials: KH
authors.lastname: Wan
authors.affiliation: Department of Statistics, University of California Berkeley, Berkeley, CA, United States.
authors.forename: Peter J
authors.initials: PJ
authors.lastname: Bickel
authors.affiliation: Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA, United States. Electronic address: celniker@fruitfly.org.
authors.forename: Susan E
authors.initials: SE
authors.lastname: Celniker
mesh_terms: D000818:Animals; D002843:Chromatin / Q000235:genetics; D004261:DNA Replication / Q000235:genetics*; D057225:Data Mining; D030541:Databases, Genetic; D015509:Developmental Biology / Q000379:methods*; D004331:Drosophila melanogaster / Q000235:genetics / Q000254:growth & development; D049750:Genome, Insect
chemical_list: D002843:Chromatin
keywords: Chromatin; Drosophila; Mining; Transcription; modENCODE