title: Identification of biomarker genes to predict biodegradation of 1,4-dioxane.
abstract: Bacterial multicomponent monooxygenase gene targets in Pseudonocardia dioxanivorans CB1190 were evaluated for their use as biomarkers to identify the potential for 1,4-dioxane biodegradation in pure cultures and environmental samples. Our studies using laboratory pure cultures and industrial activated sludge samples suggest that the presence of genes associated with dioxane monooxygenase, propane monooxygenase, alcohol dehydrogenase, and aldehyde dehydrogenase are promising indicators of 1,4-dioxane biotransformation; however, gene abundance was insufficient to predict actual biodegradation. A time course gene expression analysis of dioxane and propane monooxygenases in Pseudonocardia dioxanivorans CB1190 and mixed communities in wastewater samples revealed important associations with the rates of 1,4-dioxane removal. In addition, transcripts of alcohol dehydrogenase and aldehyde dehydrogenase genes were upregulated during biodegradation, although only the aldehyde dehydrogenase was significantly correlated with 1,4-dioxane concentrations. Expression of the propane monooxygenase demonstrated a time-dependent relationship with 1,4-dioxane biodegradation in P. dioxanivorans CB1190, with increased expression occurring after over 50% of the 1,4-dioxane had been removed. While the fraction of P. dioxanivorans CB1190-like bacteria among the total bacterial population significantly increased with decrease in 1,4-dioxane concentrations in wastewater treatment samples undergoing active biodegradation, the abundance and expression of monooxygenase-based biomarkers were better predictors of 1,4-dioxane degradation than taxonomic 16S rRNA genes. This study illustrates that specific bacterial monooxygenase and dehydrogenase gene targets together can serve as effective biomarkers for 1,4-dioxane biodegradation in the environment.
authors.affiliation: Department of Civil and Environmental Engineering, University of California, Los Angeles, California, USA.
authors.forename: Phillip B
authors.initials: PB
authors.lastname: Gedalanga
authors.forename: Peerapong
authors.initials: P
authors.lastname: Pornwongthong
authors.forename: Rebecca
authors.initials: R
authors.lastname: Mora
authors.forename: Sheau-Yun Dora
authors.initials: SY
authors.lastname: Chiang
authors.forename: Brett
authors.initials: B
authors.lastname: Baldwin
authors.forename: Dora
authors.initials: D
authors.lastname: Ogles
authors.forename: Shaily
authors.initials: S
authors.lastname: Mahendra
mesh_terms: D000192:Actinomycetales / Q000201:enzymology / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism*; D000426:Alcohol Dehydrogenase / Q000235:genetics / Q000378:metabolism; D000444:Aldehyde Dehydrogenase / Q000235:genetics / Q000378:metabolism; D001426:Bacterial Proteins / Q000235:genetics* / Q000378:metabolism; D001711:Biotransformation; D004146:Dioxanes / Q000378:metabolism*; D005819:Genetic Markers; D012722:Sewage / Q000382:microbiology*; D062065:Wastewater / Q000382:microbiology*
chemical_list: D000426:Alcohol Dehydrogenase; D000444:Aldehyde Dehydrogenase; D001426:Bacterial Proteins; D004146:Dioxanes; D005819:Genetic Markers; D012722:Sewage; D062065:Wastewater; C025223:1,4-dioxane