title: Shewanella oneidensis cytochrome c nitrite reductase (ccNiR) does not disproportionate hydroxylamine to ammonia and nitrite, despite a strongly favorable driving force.
abstract: Cytochrome c nitrite reductase (ccNiR) from Shewanella oneidensis, which catalyzes the six-electron reduction of nitrite to ammonia in vivo, was shown to oxidize hydroxylamine in the presence of large quantities of this substrate, yielding nitrite as the sole free nitrogenous product. UV-visible stopped-flow and rapid-freeze-quench electron paramagnetic resonance data, along with product analysis, showed that the equilibrium between hydroxylamine and nitrite is fairly rapidly established in the presence of high initial concentrations of hydroxylamine, despite said equilibrium lying far to the left. By contrast, reduction of hydroxylamine to ammonia did not occur, even though disproportionation of hydroxylamine to yield both nitrite and ammonia is strongly thermodynamically favored. This suggests a kinetic barrier to the ccNiR-catalyzed reduction of hydroxylamine to ammonia. A mechanism for hydroxylamine reduction is proposed in which the hydroxide group is first protonated and released as water, leaving what is formally an NH2(+) moiety bound at the heme active site. This species could be a metastable intermediate or a transition state but in either case would exist only if it were stabilized by the donation of electrons from the ccNiR heme pool into the empty nitrogen p orbital. In this scenario, ccNiR does not catalyze disproportionation because the electron-donating hydroxylamine does not poise the enzyme at a sufficiently low potential to stabilize the putative dehydrated hydroxylamine; presumably, a stronger reductant is required for this.
authors.affiliation: Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee , Milwaukee, Wisconsin 53211, United States.
authors.forename: Matthew
authors.initials: M
authors.lastname: Youngblut
authors.forename: Daniel J
authors.initials: DJ
authors.lastname: Pauly
authors.forename: Natalia
authors.initials: N
authors.lastname: Stein
authors.forename: Daniel
authors.initials: D
authors.lastname: Walters
authors.forename: John A
authors.initials: JA
authors.lastname: Conrad
authors.forename: Graham R
authors.initials: GR
authors.lastname: Moran
authors.forename: Brian
authors.initials: B
authors.lastname: Bennett
authors.forename: A Andrew
authors.initials: AA
authors.lastname: Pacheco
mesh_terms: D000641:Ammonia / Q000737:chemistry / Q000378:metabolism*; D020134:Catalytic Domain; D045263:Cytochromes a1 / Q000737:chemistry / Q000378:metabolism*; D003575:Cytochromes c1 / Q000737:chemistry / Q000378:metabolism*; D019811:Hydroxylamine / Q000737:chemistry / Q000378:metabolism*; D009565:Nitrate Reductases / Q000737:chemistry / Q000378:metabolism*; D009573:Nitrites / Q000737:chemistry / Q000378:metabolism*; D020592:Shewanella / Q000201:enzymology*; D013816:Thermodynamics
chemical_list: D009573:Nitrites; D019811:Hydroxylamine; D000641:Ammonia; D045263:Cytochromes a1; D003575:Cytochromes c1; D009565:Nitrate Reductases; C054690:nitrate reductase (cytochrome)