title: Segmentation of choroidal boundary in enhanced depth imaging OCTs using a multiresolution texture based modeling in graph cuts.
abstract: The introduction of enhanced depth imaging optical coherence tomography (EDI-OCT) has provided the advantage of in vivo cross-sectional imaging of the choroid, similar to the retina, with standard commercially available spectral domain (SD) OCT machines. A texture-based algorithm is introduced in this paper for fully automatic segmentation of choroidal images obtained from an EDI system of Heidelberg 3D OCT Spectralis. Dynamic programming is utilized to determine the location of the retinal pigment epithelium (RPE). Bruch's membrane (BM) (the blood-retina barrier which separates the RPE cells of the retina from the choroid) can be segmented by searching for the pixels with the biggest gradient value below the RPE. Furthermore, a novel method is proposed to segment the choroid-sclera interface (CSI), which employs the wavelet based features to construct a Gaussian mixture model (GMM). The model is then used in a graph cut for segmentation of the choroidal boundary. The proposed algorithm is tested on 100 EDI OCTs and is compared with manual segmentation. The results showed an unsigned error of 2.48 ± 0.32 pixels for BM extraction and 9.79 ± 3.29 pixels for choroid detection. It implies significant improvement of the proposed method over other approaches like k-means and graph cut methods.
authors.affiliation: Department of Biomedical Engineering, Medical Image and Signal Processing Research Center, Isfahan University of Medical Sciences, Isfahan 81745, Iran.
authors.forename: Hajar
authors.initials: H
authors.lastname: Danesh
authors.affiliation: Department of Biomedical Engineering, Medical Image and Signal Processing Research Center, Isfahan University of Medical Sciences, Isfahan 81745, Iran.
authors.forename: Raheleh
authors.initials: R
authors.lastname: Kafieh
authors.affiliation: Department of Biomedical Engineering, Medical Image and Signal Processing Research Center, Isfahan University of Medical Sciences, Isfahan 81745, Iran.
authors.forename: Hossein
authors.identifier: 0000-0002-0551-3636
authors.initials: H
authors.lastname: Rabbani
authors.affiliation: Noor Ophthalmology Research Center, Tehran 1968653111, Iran.
authors.forename: Fedra
authors.identifier: 0000-0002-2661-5439
authors.initials: F
authors.lastname: Hajizadeh
mesh_terms: D000465:Algorithms; D002829:Choroid / Q000473:pathology / Q000502:physiology*; D003941:Diagnostic Techniques, Ophthalmological; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional; D015233:Models, Statistical; D010363:Pattern Recognition, Automated; D011336:Probability; D015203:Reproducibility of Results; D041623:Tomography, Optical Coherence / Q000379:methods*