title: Dynamic molecular graphs: "hopping" structures.
abstract: This work aims to contribute to the discussion about the suitability of bond paths and bond-critical points as indicators of chemical bonding defined within the theoretical framework of the quantum theory of atoms in molecules. For this purpose, we consider the temporal evolution of the molecular structure of [Fe{C(CH2 )3 }(CO)3 ] throughout Born-Oppenheimer molecular dynamics (BOMD), which illustrates the changing behaviour of the molecular graph (MG) of an electronic system. Several MGs with significant lifespans are observed across the BOMD simulations. The bond paths between the trimethylenemethane and the metallic core are uninterruptedly formed and broken. This situation is reminiscent of a "hopping" ligand over the iron atom. The molecular graph wherein the bonding between trimethylenemethane and the iron atom takes place only by means of the tertiary carbon atom has the longest lifespan of all the considered structures, which is consistent with the MG found by X-ray diffraction experiments and quantum chemical calculations. In contrast, the η(4) complex predicted by molecular-orbital theory has an extremely brief lifetime. The lifespan of different molecular structures is related to bond descriptors on the basis of the topology of the electron density such as the ellipticities at the FeCH2 bond-critical points and electron delocalisation indices. This work also proposes the concept of a dynamic molecular graph composed of the different structures found throughout the BOMD trajectories in analogy to a resonance hybrid of Lewis structures. It is our hope that the notion of dynamic molecular graphs will prove useful in the discussion of electronic systems, in particular for those in which analysis on the basis of static structures leads to controversial conclusions.
authors.affiliation: Instituto de Química, Universidad Nacional Autónoma de México, México D.F. 04510 (México); Centro Conjunto de Investigación en Química Sustentable, UAEMex-UNAM, Carretera Toluca-Atlacomulco km 14.5, Toluca, 50200 (México). fercor@unam.mx.
authors.forename: Fernando
authors.initials: F
authors.lastname: Cortés-Guzmán
authors.forename: Tomas
authors.initials: T
authors.lastname: Rocha-Rinza
authors.forename: José Manuel
authors.initials: JM
authors.lastname: Guevara-Vela
authors.forename: Gabriel
authors.initials: G
authors.lastname: Cuevas
authors.forename: Rosa María
authors.initials: RM
authors.lastname: Gómez
keywords: atoms in molecules; bond theory; hapticity; metal-ligand interactions; molecular dynamics