Structure and evolution of the magnetochrome domains: no longer alone.
Magnetotactic bacteria (MTB) can swim along Earth's magnetic field lines, thanks to the alignment of dedicated cytoplasmic organelles. These organelles, termed magnetosomes, are proteolipidic vesicles filled by a 35-120 nm crystal of either magnetite or greigite. The formation and alignment of magnetosomes are mediated by a group of specific genes, the mam genes, encoding the magnetosome-associated proteins. The whole process of magnetosome biogenesis can be divided into four sequential steps; (i) cytoplasmic membrane invagination, (ii) magnetosomes alignment, (iii) iron crystal nucleation and (iv) species-dependent mineral size and shape control. Since both magnetite and greigite are a mix of iron (III) and iron (II), iron redox state management within the magnetosome vesicle is a key issue. Recently, studies have started pointing out the importance of a MTB-specific c-type cytochrome domain found in several magnetosome-associated proteins (MamE, P, T, and X). This magnetochrome (MCR) domain is almost always found in tandem, and this tandem is either found alone (MamT), in combination with a PDZ domain (MamP), a domain of unknown function (MamX) or with a trypsin combined to one or two PDZ domains (MamE). By taking advantage of new genomic data available on MTB and a recent structural study of MamP, which helped define the MCR domain boundaries, we attempt to retrace the evolutionary history within and between the different MCR-containing proteins. We propose that the observed tandem repeat of MCR is the result of a convergent evolution and attempt to explain why this domain is rarely found alone.
Commissariat à l'énergie Atomique, DSV, IBEB, Lab Bioenerget Cellulaire Saint-Paul-lez-Durance, France ; Centre National de la Recherche Scientifique, UMR Biol Veget and Microbiol Environ Saint-Paul-lez-Durance, France ; Aix-Marseille Université Saint-Paul-lez-Durance, France.
Pascal
P
Arnoux
Commissariat à l'énergie Atomique, DSV, IBEB, Lab Bioenerget Cellulaire Saint-Paul-lez-Durance, France ; Centre National de la Recherche Scientifique, UMR Biol Veget and Microbiol Environ Saint-Paul-lez-Durance, France ; Aix-Marseille Université Saint-Paul-lez-Durance, France.
Marina I
MI
Siponen
Commissariat à l'énergie Atomique, DSV, IBEB, Lab Bioenerget Cellulaire Saint-Paul-lez-Durance, France ; Centre National de la Recherche Scientifique, UMR Biol Veget and Microbiol Environ Saint-Paul-lez-Durance, France ; Aix-Marseille Université Saint-Paul-lez-Durance, France.
Christopher T
CT
Lefèvre
Commissariat à l'énergie Atomique, DSV, IBEB, Lab Bioenerget Cellulaire Saint-Paul-lez-Durance, France ; Centre National de la Recherche Scientifique, UMR Biol Veget and Microbiol Environ Saint-Paul-lez-Durance, France ; Aix-Marseille Université Saint-Paul-lez-Durance, France.
Nicolas
N
Ginet
Commissariat à l'énergie Atomique, DSV, IBEB, Lab Bioenerget Cellulaire Saint-Paul-lez-Durance, France ; Centre National de la Recherche Scientifique, UMR Biol Veget and Microbiol Environ Saint-Paul-lez-Durance, France ; Aix-Marseille Université Saint-Paul-lez-Durance, France.
David
D
Pignol
cytochrome; evolution; iron; magnetochrome; magnetosome; magnetotactic bacteria