title: Catalytic roles of substrate-binding residues in coenzyme B12-dependent ethanolamine ammonia-lyase.
abstract: Ethanolamine ammonia-lyase (EAL) catalyzes the adenosylcobalamin-dependent conversion of ethanolamine to acetaldehyde and ammonia. 1-OH of the substrate is hydrogen-bonded with Gluα287, Argα160, and Asnα193 and 2-NH2 with Gluα287, Glnα162, and Aspα362. The active site somewhat resembles that of diol dehydratase. All five residues were important for the high-affinity binding of the substrate and for catalysis. The -COO(-) group at residue α287 was absolutely required for activity and coenzyme Co-C bond cleavage, and there was a spatially optimal position for it, suggesting that Gluα287 contributes to Co-C bond homolysis, stabilizes the transition state for the migration of NH2 from C2 to C1 through partial deprotonation of spectator OH, and functions as a base in the elimination of ammonia. A positive charge and/or the hydrogen bond at position α160 and the hydrogen bonds at positions α162 and α193 with the substrate are important for catalysis and for preventing a radical intermediate from undergoing side reactions. Argα160 would stabilize the trigonal transition state in NH2 migration by electrostatic catalysis and hydrogen bonding with spectator OH. Asnα193 would contribute to maintaining the appropriate position and direction of the guanidinium group of Argα160, as well. Hydrogen bond acceptors were necessary at position α162, but hydrogen bond donors were rather harmful. Glnα162 might stabilize the trigonal transition state by accepting a hydrogen bond from migrating NH3(+). The activity was very sensitive to the position of -COO(-) at α362. Aspα362 would assist Co-C bond homolysis indirectly and stabilize the trigonal transition state by accepting a hydrogen bond from migrating NH3(+) and electrostatic interaction.
authors.affiliation: Department of Bioscience and Biotechnology, Graduate School of Natural Science and Technology, Okayama University , Tsushima-naka, Kita-ku, Okayama 700-8530, Japan.
authors.forename: Koichi
authors.initials: K
authors.lastname: Mori
authors.forename: Toshihiro
authors.initials: T
authors.lastname: Oiwa
authors.forename: Satoshi
authors.initials: S
authors.lastname: Kawaguchi
authors.forename: Kyosuke
authors.initials: K
authors.lastname: Kondo
authors.forename: Yusuke
authors.initials: Y
authors.lastname: Takahashi
authors.forename: Tetsuo
authors.initials: T
authors.lastname: Toraya
mesh_terms: D001665:Binding Sites; D002384:Catalysis; D020134:Catalytic Domain; D003038:Cobamides / Q000378:metabolism; D004578:Electron Spin Resonance Spectroscopy; D029968:Escherichia coli Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D004981:Ethanolamine Ammonia-Lyase / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D006860:Hydrogen Bonding; D016297:Mutagenesis, Site-Directed
chemical_list: D003038:Cobamides; D029968:Escherichia coli Proteins; D004981:Ethanolamine Ammonia-Lyase; C000913:cobamamide