title: A comprehensive texture segmentation framework for segmentation of capillary non-perfusion regions in fundus fluorescein angiograms.
abstract: Capillary non-perfusion (CNP) in the retina is a characteristic feature used in the management of a wide range of retinal diseases. There is no well-established computation tool for assessing the extent of CNP. We propose a novel texture segmentation framework to address this problem. This framework comprises three major steps: pre-processing, unsupervised total variation texture segmentation, and supervised segmentation. It employs a state-of-the-art multiphase total variation texture segmentation model which is enhanced by new kernel based region terms. The model can be applied to texture and intensity-based multiphase problems. A supervised segmentation step allows the framework to take expert knowledge into account, an AdaBoost classifier with weighted cost coefficient is chosen to tackle imbalanced data classification problems. To demonstrate its effectiveness, we applied this framework to 48 images from malarial retinopathy and 10 images from ischemic diabetic maculopathy. The performance of segmentation is satisfactory when compared to a reference standard of manual delineations: accuracy, sensitivity and specificity are 89.0%, 73.0%, and 90.8% respectively for the malarial retinopathy dataset and 80.8%, 70.6%, and 82.1% respectively for the diabetic maculopathy dataset. In terms of region-wise analysis, this method achieved an accuracy of 76.3% (45 out of 59 regions) for the malarial retinopathy dataset and 73.9% (17 out of 26 regions) for the diabetic maculopathy dataset. This comprehensive segmentation framework can quantify capillary non-perfusion in retinopathy from two distinct etiologies, and has the potential to be adopted for wider applications.
authors.affiliation: Department of Eye and Vision Science, University of Liverpool, Liverpool, United Kingdom; St. Paul's Eye Unit, Royal Liverpool University Hospital, Liverpool, United Kingdom.
authors.forename: Yalin
authors.initials: Y
authors.lastname: Zheng
authors.affiliation: Department of Eye and Vision Science, University of Liverpool, Liverpool, United Kingdom; St. Paul's Eye Unit, Royal Liverpool University Hospital, Liverpool, United Kingdom.
authors.forename: Man Ting
authors.initials: MT
authors.lastname: Kwong
authors.affiliation: Department of Eye and Vision Science, University of Liverpool, Liverpool, United Kingdom; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Blantyre, Malawi.
authors.forename: Ian J C
authors.initials: IJ
authors.lastname: Maccormick
authors.affiliation: Department of Eye and Vision Science, University of Liverpool, Liverpool, United Kingdom; St. Paul's Eye Unit, Royal Liverpool University Hospital, Liverpool, United Kingdom.
authors.forename: Nicholas A V
authors.initials: NA
authors.lastname: Beare
authors.affiliation: Department of Eye and Vision Science, University of Liverpool, Liverpool, United Kingdom; St. Paul's Eye Unit, Royal Liverpool University Hospital, Liverpool, United Kingdom.
authors.forename: Simon P
authors.initials: SP
authors.lastname: Harding
mesh_terms: D002196:Capillaries / Q000473:pathology* / Q000503:physiopathology; D003930:Diabetic Retinopathy / Q000175:diagnosis / Q000473:pathology / Q000503:physiopathology; D005451:Fluorescein Angiography / Q000379:methods*; D005654:Fundus Oculi; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D008288:Malaria / Q000150:complications; D012164:Retinal Diseases / Q000175:diagnosis* / Q000473:pathology* / Q000503:physiopathology
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