title: Draft genome of formaldehyde-degrading strain, Pseudomonas monteilii IOFA19.
abstract: The draft genome of Pseudomonas monteilii strain IOFA19 isolated from deep-sea sediment of the Indian Ocean was sequenced to gain insights into its efficient metabolic pathway for degrading formaldehyde. The annotated genome of this strain was subjected to comparative analysis with the genomes of existing sequenced P. monteilii strains QM, SB3101, and SB3078. Differences in the overall genomic content were observed, and relative genes that were hypothetically involved in the formaldehyde-degrading mechanism were identified.
authors.affiliation: State Key Laboratory Breeding Base of Marine Genetic Resource, Third Institute of Oceanography, SOA, Xiamen 361005, China.
authors.forename: Yang
authors.initials: Y
authors.lastname: Liu
authors.affiliation: State Key Laboratory Breeding Base of Marine Genetic Resource, Third Institute of Oceanography, SOA, Xiamen 361005, China.
authors.forename: Xinglin
authors.initials: X
authors.lastname: Chen
authors.affiliation: Computational Genomics, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany.
authors.forename: Jochen
authors.initials: J
authors.lastname: Blom
authors.affiliation: State Key Laboratory Breeding Base of Marine Genetic Resource, Third Institute of Oceanography, SOA, Xiamen 361005, China.
authors.forename: Zhiwei
authors.initials: Z
authors.lastname: Yi
authors.affiliation: State Key Laboratory Breeding Base of Marine Genetic Resource, Third Institute of Oceanography, SOA, Xiamen 361005, China.
authors.forename: Jian
authors.initials: J
authors.lastname: Wen
authors.affiliation: State Key Laboratory Breeding Base of Marine Genetic Resource, Third Institute of Oceanography, SOA, Xiamen 361005, China; Collaborative Innovation Center of Deep Sea Biology, Hangzhou 310058, China. Electronic address: zeng@tio.org.cn.
authors.forename: Runying
authors.initials: R
authors.lastname: Zeng
mesh_terms: D001483:Base Sequence; D005557:Formaldehyde / Q000378:metabolism; D016680:Genome, Bacterial / Q000235:genetics*; D023281:Genomics; D019015:Geologic Sediments / Q000382:microbiology*; D019156:Indian Ocean; D053858:Metabolic Networks and Pathways / Q000235:genetics*; D008969:Molecular Sequence Data; D011549:Pseudomonas / Q000235:genetics* / Q000378:metabolism; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D013045:Species Specificity
chemical_list: D012336:RNA, Ribosomal, 16S; D005557:Formaldehyde
keywords: Comparative genomics; Formaldehyde-degrading strain; Marine bacteria; Pseudomonas monteilii