title: Bayesian inference of whole-organ deformation dynamics from limited space-time point data.
abstract: To understand the morphogenetic mechanisms of organ development and regeneration, it is essential to clarify the inter-hierarchical relationship between microscopic, molecular/cellular activities and organ-level tissue deformation dynamics. While the former have been studied for several decades, the latter - macroscopic geometrical information about physical tissue deformation - is often missing, especially for many vertebrates. This is mainly because live recording of detailed cell behaviors in whole tissues during vertebrate organogenesis is technically difficult. In this study, we have developed a novel method that combines snapshot lineage tracing with Bayesian statistical estimation to construct whole-organ deformation maps from landmark data on limited numbers of space-time points. Following the validation of the method using artificially generated data sets, we applied it to the analysis of tissue deformation dynamics in chick limb development. A quantitative tissue deformation map for St.23-St.24 has been constructed, and its precision has been proven by evaluating its predictive performance. Geometrical analyses of the map have revealed a spatially heterogeneous volume growth pattern that is consistent with the expression pattern of a major morphogen and anisotropic tissue deformation along an axis. Thus, our method enables deformation dynamics analysis in organogenesis using practical lineage marking techniques.
authors.affiliation: Laboratory for Developmental Morphogeometry, RIKEN Center for Developmental Biology, Kobe 650-0047, Japan; PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama, Japan. Electronic address: morishita@cdb.riken.jp.
authors.forename: Yoshihiro
authors.initials: Y
authors.lastname: Morishita
authors.affiliation: PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama, Japan; Division of Biological Science, Graduate School of Science, Nagoya University Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan.
authors.forename: Takayuki
authors.initials: T
authors.lastname: Suzuki
mesh_terms: D000818:Animals; D066264:Datasets as Topic; D047108:Embryonic Development / Q000502:physiology*; D006801:Humans; D008954:Models, Biological; D038081:Organogenesis / Q000502:physiology*
keywords: Chick limb; Deformation map; Development; Estimation; Morphogenesis