title: Analysis of the DNA Fourier transform-infrared microspectroscopic signature using an all-reflecting objective.
abstract: The Fourier transform-infrared (FT-IR) signature of dry samples of DNA and DNA-polypeptide complexes, as studied by IR microspectroscopy using a diamond attenuated total reflection (ATR) objective, has revealed important discriminatory characteristics relative to the PO2(-) vibrational stretchings. However, DNA IR marks that provide information on the sample's richness in hydrogen bonds have not been resolved in the spectral profiles obtained with this objective. Here we investigated the performance of an "all reflecting objective" (ARO) for analysis of the FT-IR signal of hydrogen bonds in DNA samples differing in base richness types (salmon testis vs calf thymus). The results obtained using the ARO indicate prominent band peaks at the spectral region representative of the vibration of nitrogenous base hydrogen bonds and of NH and NH2 groups. The band areas at this spectral region differ in agreement with the DNA base richness type when using the ARO. A peak assigned to adenine was more evident in the AT-rich salmon DNA using either the ARO or the ATR objective. It is concluded that, for the discrimination of DNA IR hydrogen bond vibrations associated with varying base type proportions, the use of an ARO is recommended.
authors.affiliation: Department of Structural and Functional Biology, Institute of Biology, University of Campinas (Unicamp), 13083-862 Campinas, SP, Brazil.
authors.forename: Maria Luiza S
authors.initials: ML
authors.lastname: Mello
authors.affiliation: Department of Structural and Functional Biology, Institute of Biology, University of Campinas (Unicamp), 13083-862 Campinas, SP, Brazil. Electronic address: camposvi@unicamp.br.
authors.forename: Benedicto C
authors.initials: BC
authors.lastname: Vidal
mesh_terms: D000818:Animals; D002417:Cattle; D004247:DNA / Q000737:chemistry / Q000648:ultrastructure*; D006860:Hydrogen Bonding; D015591:Microspectrophotometry / Q000379:methods; D012474:Salmon; D017550:Spectroscopy, Fourier Transform Infrared / Q000379:methods*
chemical_list: D004247:DNA
keywords: AT-biased DNA; All reflecting objective; Calf thymus; DNA; FT-IR; Salmon