Use of posterior predictive checks as an inferential tool for investigating individual heterogeneity in animal population vital rates.
The investigation of individual heterogeneity in vital rates has recently received growing attention among population ecologists. Individual heterogeneity in wild animal populations has been accounted for and quantified by including individually varying effects in models for mark-recapture data, but the real need for underlying individual effects to account for observed levels of individual variation has recently been questioned by the work of Tuljapurkar et al. (Ecology Letters, 12, 93, 2009) on dynamic heterogeneity. Model-selection approaches based on information criteria or Bayes factors have been used to address this question. Here, we suggest that, in addition to model-selection, model-checking methods can provide additional important insights to tackle this issue, as they allow one to evaluate a model's misfit in terms of ecologically meaningful measures. Specifically, we propose the use of posterior predictive checks to explicitly assess discrepancies between a model and the data, and we explain how to incorporate model checking into the inferential process used to assess the practical implications of ignoring individual heterogeneity. Posterior predictive checking is a straightforward and flexible approach for performing model checks in a Bayesian framework that is based on comparisons of observed data to model-generated replications of the data, where parameter uncertainty is incorporated through use of the posterior distribution. If discrepancy measures are chosen carefully and are relevant to the scientific context, posterior predictive checks can provide important information allowing for more efficient model refinement. We illustrate this approach using analyses of vital rates with long-term mark-recapture data for Weddell seals and emphasize its utility for identifying shortfalls or successes of a model at representing a biological process or pattern of interest. We show how posterior predictive checks can be used to strengthen inferences in ecological studies. We demonstrate the application of this method on analyses dealing with the question of individual reproductive heterogeneity in a population of Antarctic pinnipeds.
Department of Ecology, Montana State University Bozeman, Montana.
Thierry
T
Chambert
Department of Ecology, Montana State University Bozeman, Montana.
Jay J
JJ
Rotella
Department of Mathematical Sciences, Montana State University Bozeman, Montana.
Megan D
MD
Higgs
Bayesian inference; Leptonychotes weddellii; dynamic heterogeneity; fixed heterogeneity; individual variation; model checking; posterior predictive checking; state-space models