Comparative analysis of carbohydrate binding properties of Sambucus nigra lectins and ribosome-inactivating proteins.
In the past three decades a lot of research has been done on the extended family of carbohydrate-binding proteins from Sambucus nigra, including several so-called type 2 RIPs as well as hololectins. Although all these proteins have been studied for their carbohydrate-binding properties using hapten inhibition assays, detailed carbohydrate specificity studies have only been performed for a few Sambucus proteins. In particular SNA-I, has been studied extensively. Because of its unique binding characteristics this lectin was developed as an important tool in glycoconjugate research to detect sialic acid containing glycoconjugates. At present much less information is available with respect to the detailed carbohydrate binding specificity of other S. nigra lectins and RIPs, and as a consequence their applications remain limited. In this paper we report a comparative analysis of several lectins from S. nigra using the glycan microarray technology. Ultimately a better understanding of the ligands for each lectin can contribute to new/more applications for these lectins in glycoconjugate research. Furthermore, the data from glycan microarray analyses combined with the previously obtained sequence information can help to explain how evolution within a single lectin family eventually yielded a set of carbohydrate-binding proteins with a very broad specificity range.
Department of Molecular Biotechnology, Lab of Biochemistry and Glycobiology, Ghent University, Coupure Links 653, 9000, Ghent, Belgium.
Chenjing
C
Shang
Els J M
EJ
Van Damme
D000595:Amino Acid Sequence; D001665:Binding Sites; D030562:Databases, Protein; D005638:Fruit / Q000737:chemistry; D008024:Ligands; D008969:Molecular Sequence Data; D010802:Phylogeny; D024301:Plant Bark / Q000737:chemistry; D037121:Plant Lectins / Q000737:chemistry / Q000378:metabolism*; D011134:Polysaccharides / Q000737:chemistry / Q000378:metabolism*; D040081:Protein Array Analysis; D054730:Protein Interaction Domains and Motifs; D020033:Protein Isoforms / Q000737:chemistry / Q000378:metabolism; D054788:Ribosome Inactivating Proteins / Q000737:chemistry / Q000378:metabolism*; D027924:Sambucus nigra / Q000737:chemistry*; D016415:Sequence Alignment
D008024:Ligands; D037121:Plant Lectins; D011134:Polysaccharides; D020033:Protein Isoforms; D054788:Ribosome Inactivating Proteins