RNAbrowse: RNA-Seq de novo assembly results browser.
Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.
Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France.
Jérôme
J
Mariette
Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France.
Céline
C
Noirot
Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France.
Ibounyamine
I
Nabihoudine
Plate-forme SIGENAE/Génétique Cellulaire, INRA, Castanet-Tolosan, France.
Philippe
P
Bardou
Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France.
Claire
C
Hoede
Plate-forme SIGENAE/Génétique Cellulaire, INRA, Castanet-Tolosan, France.
Anis
A
Djari
Plate-forme SIGENAE/Génétique Cellulaire, INRA, Castanet-Tolosan, France.
Cédric
C
Cabau
Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France; Plate-forme SIGENAE/Génétique Cellulaire, INRA, Castanet-Tolosan, France.
Christophe
C
Klopp
D019295:Computational Biology / Q000379:methods; D020869:Gene Expression Profiling; D006801:Humans; D020407:Internet; D017423:Sequence Analysis, RNA / Q000379:methods*; D012984:Software; D014584:User-Computer Interface