Genetic diversity analysis of okra (Abelmoschus esculentus L.) by inter-simple sequence repeat (ISSR) markers.
Okra (Abelmoschus esculentus L.) is not only a nutrient-rich vegetable but also an important medicinal herb. Inter-simple sequence repeat (ISSR) markers were employed to investigate the genetic diversity and differentiation of 24 okra genotypes. In this study, the PCR products were separated by electrophoresis on 8% nondenaturing polyacrylamide gel and visualized by silver staining. The 22 ISSR primers produced 289 amplified DNA fragments, and 145 (50%) fragments were polymorphic. The 289 markers were used to construct the dendrogram based on the unweighted pair-group method with arithmetic average (UPGMA) cluster analysis. The dendrogram indicated that 24 okras were clustered into 4 geographically distinct groups. The average polymorphism information content (PIC) was 0.531929, which showed that the majority of primers were informative. The high values of allele frequency, genetic diversity, and heterozygosity showed that primer-sample combinations produced measurable fragments. The mean distances ranged from 0.045455 to 0.454545. The dendrogram indicated that the ISSR markers succeeded in distinguishing most of the 24 varieties in relation to their genetic backgrounds and geographical origins.
School of Biology, Hunan University, Changsha, China.
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CY
Yuan
School of Biology, Hunan University, Changsha, China.
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C
Zhang
School of Biology, Hunan University, Changsha, China.
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P
Wang
School of Biology, Hunan University, Changsha, China.
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S
Hu
School of Biology, Hunan University, Changsha, China.
H P
HP
Chang
School of Biology, Hunan University, Changsha, China.
W J
WJ
Xiao
School of Biology, Hunan University, Changsha, China.
X T
XT
Lu
Department of Pharmaceutics, University of Florida, Orlando, FL, USA.
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SB
Jiang
College of Electrical and Information Engineering, Hunan University, Changsha, China yjz@hnu.edu.cn.
J Z
JZ
Ye
School of Biology, Hunan University, Changsha, China.
X H
XH
Guo
D028483:Abelmoschus / Q000235:genetics*; D015415:Biomarkers; D014644:Genetic Variation; D005838:Genotype; D006801:Humans; D018895:Microsatellite Repeats / Q000235:genetics*; D058974:Phylogeography
D015415:Biomarkers