Development and validation of a macroarray system--MutaCHIP ARTERO--for the detection of genetic variants involved in the pathogenesis of atherosclerosis.
BACKGROUND
Cardiovascular diseases are the leading cause of death in developed countries. The underlying mechanism is often atherosclerotic remodeling of blood vessels in organs such as heart, kidney, brain, and large arteries in case of peripheral arterial disease. Beside environmental and behavioral factors such as smoking or lack of physical activity, genetic variants in genes involved in lipid metabolism, blood pressure regulation, oxidative stress, and coagulation play a prominent role in the pathogenesis of atherosclerosis.


METHODS
Thus, we developed and validated for clinical use and research a macroarray system for the simultaneous detection of key genetic variants in genes involved in lipid metabolism, blood pressure regulation, oxidative stress, and coagulation.


RESULTS
When compared with standard PCR technologies to determine all these genetic variants in parallel, the macroarray system (MutaCHIP ARTERO) was as accurate but faster, cheaper, and easier to handle compared to classical real time PCR based technologies.


CONCLUSIONS
MutaCHIP ARTERO is a gene chip for diagnostics of a complex genetic panel involved in the pathogenesis of atherosclerosis. This method is as sensitive and precise as real time PCR and is able to replicate real time PCR data previously validated in evaluation studies.
Lyubov
L
Chaykovska
Alicja
A
Zientara
Diana
D
Reser
Alexander
A
Weise
Wolfgang
W
Reichert
Berthold
B
Hocher
D050197:Atherosclerosis / Q000209:etiology* / Q000235:genetics* / Q000378:metabolism; D001777:Blood Coagulation / Q000235:genetics; D001794:Blood Pressure / Q000235:genetics; D020869:Gene Expression Profiling / Q000295:instrumentation / Q000379:methods; D014644:Genetic Variation; D006801:Humans; D050356:Lipid Metabolism / Q000235:genetics; D009154:Mutation / Q000235:genetics; D020411:Oligonucleotide Array Sequence Analysis / Q000295:instrumentation* / Q000379:methods*; D018384:Oxidative Stress / Q000235:genetics; D060888:Real-Time Polymerase Chain Reaction