A comparative analysis of the bistability switch for platelet aggregation by logic ODE based dynamical modeling.
A kinetic description of the fragile equilibrium in thrombozytes regulating blood flow would be an important basis for rational medical interventions. Challenges for such a model include regulation by a complex bistability switch that determines the transition from reversible to irreversible aggregation and sparse data on the kinetics. A so far scarcely applied technique is given by the derivation of ordinary differential equations from Boolean expressions, which are called logic ODEs. We employ a combination of light-scattering based thrombocyte aggregation data, western blot and calcium measurements to compare three different ODE approaches regarding their suitability to achieve a data-consistent model of the switch. Our analysis reveals the standardized qualitative dynamical system approach (SQUAD) to be a better choice than classical mass action formalisms. Furthermore, we analyze the dynamical properties of the platelet aggregation threshold as a basis for medical interventions such as novel platelet aggregation inhibitors.
Department of Bioinformatics, Biocenter, Am Hubland, 97074 Wuerzburg, Germany. marcel.mischnik@gmail.com dandekar@biozentrum.uni-wuerzburg.de.
Marcel
M
Mischnik
Stepan
S
Gambaryan
Hariharan
H
Subramanian
Jörg
J
Geiger
Claudia
C
Schütz
Jens
J
Timmer
Thomas
T
Dandekar
D000465:Algorithms; D019295:Computational Biology / Q000379:methods; D006801:Humans; D056004:Molecular Dynamics Simulation; D010974:Platelet Aggregation; D010975:Platelet Aggregation Inhibitors
D010975:Platelet Aggregation Inhibitors