title: Structures of protonated thymine and uracil and their monohydrated gas-phase ions from ultraviolet action spectroscopy and theory.
abstract: The strong UV chromophores thymine (Thy) and uracil (Ura) have identical heteroaromatic rings that only differ by one methyl substituent. While their photophysics has been elucidated in detail, the effect on the excited states of base protonation and single water molecules is less explored. Here we report gas-phase absorption spectra of ThyH(+) and UraH(+) and monohydrated ions and demonstrate that the substituent is not only responsible for spectral shifts but also influences the tautomer distribution, being different for bare and monohydrated ions. Spectra interpretation is aided by calculations of geometrical structures and transition energies. The lowest free-energy tautomer (denoted 178, enol-enol form) accounts for 230-280 nm (ThyH(+)) and 225-270 nm (UraH(+)) bands. ThyH(+) hardly absorbs above 300 nm, whereas a discernible band is measured for UraH(+) (275-320 nm), ascribed to the second lowest free-energy tautomer (138, enol-keto form) comprising a few percent of the UraH(+) population at room temperature. Band widths are similar to those measured of cold ions in support of very short excited-state lifetimes. Attachment of a single water increases the abundance of 138 relative to 178, 138 now clearly present for ThyH(+). 138 resembles more the tautomer present in aqueous solution than 178 does, and 138 may indeed be a relevant transition structure. The band of ThyH(+)(178) is unchanged, that of UraH(+)(178) is nearly unchanged, and that of UraH(+)(138) blue-shifts by about 10 nm. In stark contrast to protonated adenine, more than one solvating water molecule is required to re-establish the absorption of ThyH(+) and UraH(+) in aqueous solution.
authors.affiliation: Department of Physics and Astronomy, Aarhus University , DK-8000 Aarhus C, Denmark.
authors.forename: Sara Øvad
authors.initials: SØ
authors.lastname: Pedersen
authors.forename: Camilla Skinnerup
authors.initials: CS
authors.lastname: Byskov
authors.forename: Frantisek
authors.initials: F
authors.lastname: Turecek
authors.forename: Steen
authors.initials: S
authors.lastname: Brøndsted Nielsen
mesh_terms: D000225:Adenine / Q000737:chemistry; D005740:Gases / Q000737:chemistry*; D007477:Ions; D008956:Models, Chemical; D044367:Phase Transition; D011522:Protons; D011789:Quantum Theory; D013056:Spectrophotometry, Ultraviolet; D013237:Stereoisomerism; D013696:Temperature; D013816:Thermodynamics; D013941:Thymine / Q000737:chemistry*; D014498:Uracil / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
chemical_list: D005740:Gases; D007477:Ions; D011522:Protons; D014867:Water; D014498:Uracil; D000225:Adenine; D013941:Thymine