title: Uracil DNA glycosylase BKRF3 contributes to Epstein-Barr virus DNA replication through physical interactions with proteins in viral DNA replication complex.
abstract: Epstein-Barr virus (EBV) BKRF3 shares sequence homology with members of the uracil-N-glycosylase (UNG) protein family and has DNA glycosylase activity. Here, we explored how BKRF3 participates in the DNA replication complex and contributes to viral DNA replication. Exogenously expressed Flag-BKRF3 was distributed mostly in the cytoplasm, whereas BKRF3 was translocated into the nucleus and colocalized with the EBV DNA polymerase BALF5 in the replication compartment during EBV lytic replication. The expression level of BKRF3 increased gradually during viral replication, coupled with a decrease of cellular UNG2, suggesting BKRF3 enzyme activity compensates for UNG2 and ensures the fidelity of viral DNA replication. In immunoprecipitation-Western blotting, BKRF3 was coimmuno-precipitated with BALF5, the polymerase processivity factor BMRF1, and the immediate-early transactivator Rta. Coexpression of BMRF1 appeared to facilitate the nuclear targeting of BKRF3 in immunofluorescence staining. Residues 164 to 255 of BKRF3 were required for interaction with Rta and BALF5, whereas residues 81 to 166 of BKRF3 were critical for BMRF1 interaction in glutathione S-transferase (GST) pulldown experiments. Viral DNA replication was defective in cells harboring BKRF3 knockout EBV bacmids. In complementation assays, the catalytic mutant BKRF3(Q90L,D91N) restored viral DNA replication, whereas the leucine loop mutant BKRF3(H213L) only partially rescued viral DNA replication, coupled with a reduced ability to interact with the viral DNA polymerase and Rta. Our data suggest that BKRF3 plays a critical role in viral DNA synthesis predominantly through its interactions with viral proteins in the DNA replication compartment, while its enzymatic activity may be supplementary for uracil DNA glycosylase (UDG) function during virus replication.
  
  
  OBJECTIVE
  Catalytic activities of both cellular UDG UNG2 and viral UDGs contribute to herpesviral DNA replication. To ensure that the enzyme activity executes at the right time and the right place in DNA replication forks, complex formation with other components in the DNA replication machinery provides an important regulation for UDG function. In this study, we provide the mechanism for EBV UDG BKRF3 nuclear targeting and the interacting domains of BKRF3 with viral DNA replication proteins. Through knockout and complementation approaches, we further demonstrate that in addition to UDG activity, the interaction of BKRF3 with viral proteins in the replication compartment is crucial for efficient viral DNA replication.
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: Mei-Tzu
authors.initials: MT
authors.lastname: Su
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: I-Hua
authors.initials: IH
authors.lastname: Liu
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: Chia-Wei
authors.initials: CW
authors.lastname: Wu
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: Shu-Ming
authors.initials: SM
authors.lastname: Chang
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: Ching-Hwa
authors.initials: CH
authors.lastname: Tsai
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: Pei-Wen
authors.initials: PW
authors.lastname: Yang
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan.
authors.forename: Yu-Chia
authors.initials: YC
authors.lastname: Chuang
authors.affiliation: Center of General Education, National Taipei University of Nursing and Health Sciences, Taipei, Taiwan.
authors.forename: Chung-Pei
authors.initials: CP
authors.lastname: Lee
authors.affiliation: Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan mrc@ntu.edu.tw.
authors.forename: Mei-Ru
authors.initials: MR
authors.lastname: Chen
mesh_terms: D002460:Cell Line; D045744:Cell Line, Tumor; D002467:Cell Nucleus / Q000235:genetics / Q000378:metabolism; D003593:Cytoplasm / Q000235:genetics / Q000378:metabolism; D004261:DNA Replication / Q000235:genetics*; D004279:DNA, Viral / Q000235:genetics*; D004268:DNA-Binding Proteins / Q000235:genetics / Q000378:metabolism; D004259:DNA-Directed DNA Polymerase / Q000235:genetics / Q000378:metabolism; D020031:Epstein-Barr Virus Infections / Q000235:genetics / Q000378:metabolism / Q000821:virology; D016679:Genome, Viral / Q000235:genetics; D005982:Glutathione Transferase / Q000235:genetics / Q000378:metabolism; D057809:HEK293 Cells; D006367:HeLa Cells; D004854:Herpesvirus 4, Human / Q000235:genetics* / Q000378:metabolism; D006801:Humans; D051981:Uracil-DNA Glycosidase / Q000235:genetics* / Q000378:metabolism*; D014764:Viral Proteins / Q000235:genetics* / Q000378:metabolism*; D014779:Virus Replication / Q000235:genetics
chemical_list: D004279:DNA, Viral; D004268:DNA-Binding Proteins; D014764:Viral Proteins; D005982:Glutathione Transferase; C083202:BALF5 protein, Epstein-barr virus; D004259:DNA-Directed DNA Polymerase; D051981:Uracil-DNA Glycosidase