title: Pyrosequencing 16S rRNA genes of bacteria associated with wild tiger mosquito Aedes albopictus: a pilot study.
abstract: The Asian tiger mosquito Aedes (Stegomya) albopictus is an invasive species that has spread across the world in the last two decades, showing a great capacity to adapt to contrasting climates and environments. While demonstrated in many insects, the contribution of bacterial symbionts in Aedes ecology is a challenging aspect that needs to be investigated. Also some bacterial species have already been identified in Ae. albopictus using classical methods, but a more accurate survey of mosquito-associated bacterial diversity is needed to decipher the potential biological functions of bacterial symbionts in mediating or constraining insect adaptation. We surveyed the bacteria associated with field populations of Ae. albopictus from Madagascar by pyrosequencing 16S rRNA gene amplicons. Different aspects of amplicon preparation and sequencing depth were tested to optimize the breadth of bacterial diversity identified. The results revealed that all mosquitoes collected from different sites have a bacterial microbiota dominated by a single taxon, Wolbachia pipientis, which accounted for about 99% of all 92,615 sequences obtained. As Ae. albopictus is known to harbor two Wolbachia strains (wAlbA and wAlbB), a quantitative PCR was used to estimate the relative densities, (i.e., the bacteria-to-host gene ratios) of each strains in individual mosquitoes. Relative densities were between 6.25 × 10(0.01) and 5.47 × 10(0.1) for wAlbA and between 2.03 × 10(0.1) and 1.4 × 10(1) for wAlbB. Apart from Wolbachia, a total of 31 bacterial taxa were identified at the genus level using different method variations. Diversity index values were low and probably underestimated the true diversity due to the high abundance of Wolbachia sequences vastly outnumbering sequences from other taxa. Further studies should implement alternative strategies to specifically discard from analysis any sequences from Wolbachia, the dominant endosymbiotic bacterium in Ae. albopictus from this area.
authors.affiliation: Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, VetAgro Sup, FR41 BioEnvironment and Health, Université de Lyon 1 Villeurbanne, France.
authors.forename: Guillaume
authors.initials: G
authors.lastname: Minard
authors.affiliation: Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, VetAgro Sup, FR41 BioEnvironment and Health, Université de Lyon 1 Villeurbanne, France.
authors.forename: Florence-Hélène
authors.initials: FH
authors.lastname: Tran
authors.affiliation: Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, VetAgro Sup, FR41 BioEnvironment and Health, Université de Lyon 1 Villeurbanne, France.
authors.forename: Audrey
authors.initials: A
authors.lastname: Dubost
authors.affiliation: Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, VetAgro Sup, FR41 BioEnvironment and Health, Université de Lyon 1 Villeurbanne, France.
authors.forename: Van
authors.initials: V
authors.lastname: Tran-Van
authors.affiliation: Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, VetAgro Sup, FR41 BioEnvironment and Health, Université de Lyon 1 Villeurbanne, France.
authors.forename: Patrick
authors.initials: P
authors.lastname: Mavingui
authors.affiliation: Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, VetAgro Sup, FR41 BioEnvironment and Health, Université de Lyon 1 Villeurbanne, France.
authors.forename: Claire Valiente
authors.initials: CV
authors.lastname: Moro
mesh_terms: D000330:Aedes / Q000382:microbiology*; D000818:Animals; D001419:Bacteria / Q000145:classification / Q000235:genetics*; D044822:Biodiversity; D019295:Computational Biology; D005260:Female; D064307:Microbiota; D010865:Pilot Projects; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S; D017422:Sequence Analysis, DNA
chemical_list: D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S
keywords: 16S rDNA; Wolbachia; bacterial diversity; field-caught mosquitoes; high-throughput sequencing