title: On linear models and parameter identifiability in experimental biological systems.
abstract: A key problem in the biological sciences is to be able to reliably estimate model parameters from experimental data. This is the well-known problem of parameter identifiability. Here, methods are developed for biologists and other modelers to design optimal experiments to ensure parameter identifiability at a structural level. The main results of the paper are to provide a general methodology for extracting parameters of linear models from an experimentally measured scalar function - the transfer function - and a framework for the identifiability analysis of complex model structures using linked models. Linked models are composed by letting the output of one model become the input to another model which is then experimentally measured. The linked model framework is shown to be applicable to designing experiments to identify the measured sub-model and recover the input from the unmeasured sub-model, even in cases that the unmeasured sub-model is not identifiable. Applications for a set of common model features are demonstrated, and the results combined in an example application to a real-world experimental system. These applications emphasize the insight into answering "where to measure" and "which experimental scheme" questions provided by both the parameter extraction methodology and the linked model framework. The aim is to demonstrate the tools' usefulness in guiding experimental design to maximize parameter information obtained, based on the model structure.
authors.affiliation: Division of Genomics & Computational Biology, Institute for Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia.
authors.forename: Timothy O
authors.initials: TO
authors.lastname: Lamberton
authors.affiliation: Division of Molecular Cell Biology, Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.
authors.forename: Nicholas D
authors.initials: ND
authors.lastname: Condon
authors.affiliation: Division of Molecular Cell Biology, Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.
authors.forename: Jennifer L
authors.initials: JL
authors.lastname: Stow
authors.affiliation: Division of Genomics & Computational Biology, Institute for Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia; Division of Molecular Cell Biology, Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia. Electronic address: n.hamilton@uq.edu.au.
authors.forename: Nicholas A
authors.initials: NA
authors.lastname: Hamilton
mesh_terms: D016014:Linear Models; D008954:Models, Biological
keywords: Experimental design; Modeling; Ordinary differential equations; Protein trafficking