title: Analysis of differentially expressed genes in two immunologically distinct strains of Eimeria maxima using suppression subtractive hybridization and dot-blot hybridization.
abstract: BACKGROUND
  It is well known that different Eimeria maxima strains exhibit significant antigenic variation. However, the genetic basis of these phenotypes remains unclear.
  
  
  METHODS
  Total RNA and mRNA were isolated from unsporulated oocysts of E. maxima strains SH and NT, which were found to have significant differences in immunogenicity in our previous research. Two subtractive cDNA libraries were constructed using suppression subtractive hybridization (SSH) and specific genes were further analyzed by dot-blot hybridization and qRT-PCR analysis.
  
  
  RESULTS
  A total of 561 clones were selected from both cDNA libraries and the length of the inserted fragments was 0.25-1.0 kb. Dot-blot hybridization revealed a total of 86 differentially expressed clones (63 from strain SH and 23 from strain NT). Nucleotide sequencing analysis of these clones revealed ten specific contigs (six from strain SH and four from strain NT). Further analysis found that six contigs from strain SH and three from strain NT shared significant identities with previously reported proteins, and one contig was presumed to be novel. The specific differentially expressed genes were finally verified by RT-PCR and qRT-PCR analyses.
  
  
  CONCLUSIONS
  The data presented here suggest that specific genes identified between the two strains may be important molecules in the immunogenicity of E. maxima that may present potential new drug targets or vaccine candidates for coccidiosis.
authors.forename: Dandan
authors.initials: D
authors.lastname: Liu
authors.forename: Jianmei
authors.initials: J
authors.lastname: Li
authors.forename: Liqin
authors.initials: L
authors.lastname: Cao
authors.forename: Shangshang
authors.initials: S
authors.lastname: Wang
authors.forename: Hongxiao
authors.initials: H
authors.lastname: Han
authors.forename: Yantao
authors.initials: Y
authors.lastname: Wu
authors.affiliation: Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Ministry of Education Key Lab for Avian Preventive Medicine, Key Lab of Jiangsu Preventive Veterinary Medicine, College of Veterinary Medicine, Yangzhou University, 12 East Wenhui Road, Yangzhou, Jiangsu 225009, PR China. yzjptao@126.com.
authors.forename: Jianping
authors.initials: J
authors.lastname: Tao
mesh_terms: D004539:Eimeria / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D005786:Gene Expression Regulation; D015723:Gene Library; D015151:Immunoblotting; D008969:Molecular Sequence Data; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism
chemical_list: D012333:RNA, Messenger