title: A systems biology investigation of neurodegenerative dementia reveals a pivotal role of autophagy.
abstract: BACKGROUND
  Neurodegenerative dementia comprises chronic and progressive illnesses with major clinical features represented by progressive and permanent loss of cognitive and mental performance, including impairment of memory and brain functions. Many different forms of neurodegenerative dementia exist, but they are all characterized by death of specific subpopulation of neurons and accumulation of proteins in the brain. We incorporated data from OMIM and primary molecular targets of drugs in the different phases of the drug discovery process to try to reveal possible hidden mechanism in neurodegenerative dementia. In the present study, a systems biology approach was used to investigate the molecular connections among seemingly distinct complex diseases with the shared clinical symptoms of dementia that could suggest related disease mechanisms.
  
  
  RESULTS
  Network analysis was applied to characterize an interaction network of disease proteins and drug targets, revealing a major role of metabolism and, predominantly, of autophagy process in dementia and, particularly, in tauopathies. Different phases of the autophagy molecular pathway appear to be implicated in the individual disease pathophysiology and specific drug targets associated to autophagy modulation could be considered for pharmacological intervention. In particular, in view of their centrality and of the direct association to autophagy proteins in the network, PP2A subunits could be suggested as a suitable molecular target for the development of novel drugs.
  
  
  CONCLUSIONS
  The present systems biology investigation identifies the autophagy pathway as a central dis-regulated process in neurodegenerative dementia with a prevalent involvement in diseases characterized by tau inclusion and indicates the disease-specific molecules in the pathway that could be considered for therapy.
authors.affiliation: The Microsoft Research, University of Trento Centre for Computational Systems Biology (COSBI), Piazza Manifattura 1, 38068 Rovereto, Italy. caberlotto@cosbi.eu.
authors.forename: Laura
authors.initials: L
authors.lastname: Caberlotto
authors.forename: Thanh-Phuong
authors.initials: TP
authors.lastname: Nguyen
mesh_terms: D001343:Autophagy; D003704:Dementia / Q000188:drug therapy / Q000235:genetics / Q000378:metabolism / Q000473:pathology*; D058977:Molecular Sequence Annotation; D058990:Molecular Targeted Therapy; D015398:Signal Transduction; D049490:Systems Biology / Q000379:methods*