title: Modeling and simulation using CellDesigner.
abstract: In silico modeling and simulation are effective means to understand how the regulatory systems function in life. In this chapter, we explain how to build a model and run the simulation using CellDesigner, adopting the standards such as SBML and SBGN.
authors.affiliation: The Systems Biology Institute, 5-6-9 Shirokanedai, Minato-ku, Tokyo, 108-0071, Japan.
authors.forename: Yukiko
authors.initials: Y
authors.lastname: Matsuoka
authors.forename: Akira
authors.initials: A
authors.lastname: Funahashi
authors.forename: Samik
authors.initials: S
authors.lastname: Ghosh
authors.forename: Hiroaki
authors.initials: H
authors.lastname: Kitano
mesh_terms: D000818:Animals; D003198:Computer Simulation; D053263:Gene Regulatory Networks; D006801:Humans; D008954:Models, Biological; D008957:Models, Genetic; D012984:Software; D049490:Systems Biology; D015533:Transcriptional Activation